hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05221325/chunk_1/iprscan-20080502-05221325.nocrc
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Query sequence: KIAA1526
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 206.7      2e-57   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/3     206   278 ..     1    80 []    85.9  4.8e-21
SM00228    2/3     344   416 ..     1    80 []    78.6  7.7e-19
SM00228    3/3     880   960 ..     1    80 []    42.3  6.6e-08

Alignments of top-scoring domains:
SM00228: domain 1 of 3, from 206 to 278: score 85.9, E = 4.8e-21
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                      +glGfsi+g+++++ gi+vs v+pGs A+k G      L+vGD+Il+
    KIAA1526   206    EGLGFSIRGgsehgvGIYVSLVEPGSLAEKEG------LRVGDQILR 246  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   VN+ +s+  +th+eav++lk+++      k++L v   g   
    KIAA1526   247 VND-KSLARVTHAEAVKALKGSK------KLVLSVYSAG    278  

SM00228: domain 2 of 3, from 344 to 416: score 78.6, E = 7.7e-19
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       +lG++i+g+ + + gi++++v pGs A+ +G      LkvGD+Ile
    KIAA1526   344    RSLGLTIRGgaeyglGIYITGVDPGSEAEGSG------LKVGDQILE 384  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   VNG  s  +  h+eav+llk+++      ++ Ltv+  g   
    KIAA1526   385 VNG-RSFLNILHDEAVRLLKSSR------HLILTVKDVG    416  

SM00228: domain 3 of 3, from 880 to 960: score 42.3, E = 6.6e-08
                   *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl
                      + lG+ i g+ +++++   ++ +++G+ A+ +G      LkvG vIl
    KIAA1526   880    ATLGIAIEGgantrqpLPRIVTIQRGGSAHNCGQ-----LKVGHVIL 921  

                   eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   eVNG   ++g+ h ea++++ +a + +  + ++++v   +   
    KIAA1526   922 EVNG-LTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN    960  

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