hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05221325/chunk_1/iprscan-20080502-05221325.nocrc
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Query sequence: KIAA1526
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)         166.6    5.9e-47   3
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)         166.5    6.5e-47   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/3     196   275 ..     1    86 []    81.0  4.1e-22
PF00595.14.ls   1/3     196   275 ..     1    86 []    83.0  8.8e-22
PF00595.14.fs   2/3     335   413 ..     1    86 []    62.1  8.7e-17
PF00595.14.ls   2/3     335   413 ..     1    86 []    64.0  4.5e-16
PF00595.14.fs   3/3     872   943 ..     1    76 [.    23.5    6e-06
PF00595.14.ls   3/3     872   957 ..     1    86 []    19.5   0.0069

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 3, from 196 to 275: score 81.0, E = 4.1e-22
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+l +   ++glGfsi+ggs++g   gi+vs v pG + Ae+ G L
    KIAA1526   196    LVSLRRAKAHEGLGFSIRGGSEHG--VGIYVSLVEPG-SLAEKEG-L 238  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GDqIl+vN+++l+ ++h+eav+alkgs+  ++ L v    
    KIAA1526   239 RVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVY    275  

PF00595.14.ls: domain 1 of 3, from 196 to 275: score 83.0, E = 8.8e-22
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+l +   ++glGfsi+ggs++g   gi+vs v pG + Ae+ G L
    KIAA1526   196    LVSLRRAKAHEGLGFSIRGGSEHG--VGIYVSLVEPG-SLAEKEG-L 238  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GDqIl+vN+++l+ ++h+eav+alkgs+  ++ L v    
    KIAA1526   239 RVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVY    275  

PF00595.14.fs: domain 2 of 3, from 335 to 413: score 62.1, E = 8.7e-17
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v l  +  + +lG++i+gg + g   gi+++ v pG + Ae +G L
    KIAA1526   335    KVNLVLG-DGRSLGLTIRGGAEYG--LGIYITGVDPG-SEAEGSG-L 376  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GDqIl+vNG+++ n+ h+eav +lk+s+   + Ltv+   
    KIAA1526   377 KVGDQILEVNGRSFLNILHDEAVRLLKSSR--HLILTVK    413  

PF00595.14.ls: domain 2 of 3, from 335 to 413: score 64.0, E = 4.5e-16
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v l  +  + +lG++i+gg + g   gi+++ v pG + Ae +G L
    KIAA1526   335    KVNLVLG-DGRSLGLTIRGGAEYG--LGIYITGVDPG-SEAEGSG-L 376  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GDqIl+vNG+++ n+ h+eav +lk+s+   + Ltv+   
    KIAA1526   377 KVGDQILEVNGRSFLNILHDEAVRLLKSSR--HLILTVK    413  

PF00595.14.fs: domain 3 of 3, from 872 to 943: score 23.5, E = 6e-06
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+++k  +   lG+ i gg + + ++   +  +++G g+A+  G L
    KIAA1526   872    LVRVKK--SAATLGIAIEGGANTR-QPLPRIVTIQRG-GSAHNCGQL 914  

                   qaGDqIlsvNGqdlenlsheeavlalkgs<-*
                   ++G++Il+vNG  l++ +h ea+ ++ ++   
    KIAA1526   915 KVGHVILEVNGLTLRGKEHREAARIIAEA    943  

PF00595.14.ls: domain 3 of 3, from 872 to 957: score 19.5, E = 0.0069
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +v+++k  +   lG+ i gg + + ++   +  +++G g+A+  G L
    KIAA1526   872    LVRVKK--SAATLGIAIEGGANTR-QPLPRIVTIQRG-GSAHNCGQL 914  

                   qaGDqIlsvNGqdlenlsheeavlalkgsgg....sevtLtvl<-*
                   ++G++Il+vNG  l++ +h ea+ ++ ++ +++++  +  +v    
    KIAA1526   915 KVGHVILEVNGLTLRGKEHREAARIIAEAFKtkdrDYIDFLVT    957  

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