hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05120805/chunk_1/iprscan-20080502-05120805.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1520 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00664.13.ls ABC transporter transmembrane region 200.5 3.8e-57 1 PF00664.13.fs ABC transporter transmembrane region 200.0 5.1e-57 1 PF00005.17.ls ABC transporter 180.8 3e-51 1 PF00005.17.fs ABC transporter 179.0 1.1e-50 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00664.13.fs 1/1 232 495 .. 1 278 [. 200.0 5.1e-57 PF00664.13.ls 1/1 232 503 .. 1 286 [] 200.5 3.8e-57 PF00005.17.fs 1/1 576 760 .. 1 224 [] 179.0 1.1e-50 PF00005.17.ls 1/1 576 760 .. 1 224 [] 180.8 3e-51 Alignments of top-scoring domains: PF00664.13.fs: domain 1 of 1, from 232 to 495: score 200.0, E = 5.1e-57 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli l+++ ++li+a + + + p+++gr +d+ + ++ +++ + + KIAA1520 232 LVAASFFLIVAALGETF-LPYYTGRAIDG---IVIQKSMDQFSTAVV 274 slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf ++++l ++++ ++ g+ ++++ + + rl++rlr++lfr+l+ q+ ++f KIAA1520 275 IVCLL-AIGSSFAAGIRGGIFTLI--FARLNIRLRNCLFRSLVSQETSFF 321 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy d+ n++G+l sRlt+D+ +++d++++++ +++++ + v g++++mf KIAA1520 322 DE----NRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFS 367 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls +sw+L+Lv++ +p+++++s +++k ++l++++q+a a a++ aeE++s KIAA1520 368 LSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 417 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls +++TV++f++Ee e e y +l+ ++k +k a+++++ ++ l +++ KIAA1520 418 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLVV 467 yalalwfGgylvasvisgglsvgtlfaflsl<-* ++ +l++Gg+l visg++++g+l+af+ + KIAA1520 468 QVSILYYGGHL---VISGQMTSGNLIAFIIY 495 PF00664.13.ls: domain 1 of 1, from 232 to 503: score 200.5, E = 3.8e-57 *->lligilllilagatalvtfplllgrfldsgfplsdgnddhearssli l+++ ++li+a + + + p+++gr +d+ + ++ +++ + + KIAA1520 232 LVAASFFLIVAALGETF-LPYYTGRAIDG---IVIQKSMDQFSTAVV 274 slailsllavfvlqglllqgsfyllAgerlgqrlrkrlfrallrqilglf ++++l ++++ ++ g+ ++++ + + rl++rlr++lfr+l+ q+ ++f KIAA1520 275 IVCLL-AIGSSFAAGIRGGIFTLI--FARLNIRLRNCLFRSLVSQETSFF 321 dsffdtnsvGeltsRltnDvskirdglgdklgllfqslatvvgglivmfy d+ n++G+l sRlt+D+ +++d++++++ +++++ + v g++++mf KIAA1520 322 DE----NRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFMFS 367 yswkLtLvllailpllillsavlakklrklnrkeqkayakagsvaeEsls +sw+L+Lv++ +p+++++s +++k ++l++++q+a a a++ aeE++s KIAA1520 368 LSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 417 girTVkafgrEeyelerydkaledaekagikkaiiagllfgitqlisyls +++TV++f++Ee e e y +l+ ++k +k a+++++ ++ l +++ KIAA1520 418 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLVV 467 yalalwfGgylvasvisgglsvgtlfaflslgnqltgpl<-* ++ +l++Gg+l visg++++g+l+af+ + +l KIAA1520 468 QVSILYYGGHL---VISGQMTSGNLIAFIIYEFVLGDCM 503 PF00005.17.fs: domain 1 of 1, from 576 to 760: score 179.0, E = 1.1e-50 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G+v+alvGp+G+GKS+ ++l +++ + G++lld KIAA1520 576 GKVTALVGPSGSGKSSCVNILENFYP-LE--GGRVLLD--------- 610 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke ++ +s+++++ l++ i+ v+Q+p lf ++ +n+ yglp KIAA1520 611 GKPISAYDHKYLHRVISLVSQEPVLF---ARSITDNISYGLPTVPFE--- 654 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt + +a + ++ G+ ++++ gy t+ ge++++ KIAA1520 655 -------------MVVEAAQKANAHGFIMELQD-----GYSTETGEKGAQ 686 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq LSGGqkQRva ARal+++p++L+LDE+T++LD++s+ ++++++ + KIAA1520 687 LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQ-- 734 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx gitvllitHdldlldrladrilvlenG<-* tvl+i H+l +++ a i+vl++G KIAA1520 735 KHTVLIIAHRLSTVEH-AHLIVVLDKG 760 PF00005.17.ls: domain 1 of 1, from 576 to 760: score 180.8, E = 3e-51 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->GevlalvGpNGaGKSTLLkllsGllsyPtrAeGeilldgepkelgrd G+v+alvGp+G+GKS+ ++l +++ + G++lld KIAA1520 576 GKVTALVGPSGSGKSSCVNILENFYP-LE--GGRVLLD--------- 610 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ltdlssrererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggke ++ +s+++++ l++ i+ v+Q+p lf ++ +n+ yglp KIAA1520 611 GKPISAYDHKYLHRVISLVSQEPVLF---ARSITDNISYGLPTVPFE--- 654 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx reallrllgleeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgt + +a + ++ G+ ++++ gy t+ ge++++ KIAA1520 655 -------------MVVEAAQKANAHGFIMELQD-----GYSTETGEKGAQ 686 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx LSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeq LSGGqkQRva ARal+++p++L+LDE+T++LD++s+ ++++++ + KIAA1520 687 LSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQ-- 734 RF xxxxxxxxxxxxxxxxxxxxxxxxxxx gitvllitHdldlldrladrilvlenG<-* tvl+i H+l +++ a i+vl++G KIAA1520 735 KHTVLIIAHRLSTVEH-AHLIVVLDKG 760 //