hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05103022/chunk_1/iprscan-20080502-05103022.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1519
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00446                                                  27.6     0.0017   1
SM00369                                                  26.8      0.003   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/2      54    75 ..     1    24 []     7.9       45
SM00369     2/2      76    98 ..     1    24 []    18.9     0.72
SM00446     1/1     118   136 ..     1    19 []    27.6   0.0017

Alignments of top-scoring domains:
SM00369: domain 1 of 2, from 54 to 75: score 7.9, E = 45
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+ L++LdLs+N L sL +g+ q    
    KIAA1519    54    LTGLKSLDLSRNSLVSL-EGI-QY    75   

SM00369: domain 2 of 2, from 76 to 98: score 18.9, E = 0.72
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++L+L +N ++sL  ++F+    
    KIAA1519    76    LTALESLNLYYNCISSLA-EVFRL    98   

SM00446: domain 1 of 1, from 118 to 136: score 27.6, E = 0.0017
                   *->laqYRekVirlLPqLrqLD<-*
                      + +YR +V++lLP+L+qLD   
    KIAA1519   118    EPDYRLFVVHLLPKLQQLD    136  

//