hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05103022/chunk_1/iprscan-20080502-05103022.nocrc
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Query sequence: KIAA1519
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.fs Leucine Rich Repeat                             18.8    0.00043   2
PF00560.23.ls Leucine Rich Repeat                             22.4     0.0015   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   1/2      56    76 ..     1    24 []    11.0    0.058
PF00560.23.ls   1/2      56    76 ..     1    24 []    12.8        1
PF00560.23.ls   2/2      78    98 ..     1    24 []     9.6      4.2

Alignments of top-scoring domains:
PF00560.23.fs: domain 1 of 2, from 56 to 76: score 11.0, E = 0.058
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++LdLs+ N sl+ sl+  ++ l   
    KIAA1519    56    GLKSLDLSR-N-SLV-SLEG-IqYL    76   

PF00560.23.ls: domain 1 of 2, from 56 to 76: score 12.8, E = 1
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       L++LdLs+ N sl+ sl+  ++ l   
    KIAA1519    56    GLKSLDLSR-N-SLV-SLEG-IqYL    76   

PF00560.23.ls: domain 2 of 2, from 78 to 98: score 9.6, E = 4.2
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                       Le+L+L++ N  ++ sl++ +  l   
    KIAA1519    78    ALESLNLYY-N-CIS-SLAE-VfRL    98   

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