# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/sh00483.fasta.huge -Q ../query/KIAA1518.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1518, 876 aa vs ./tmplib.25089 library 1986629 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 9.8133+/-0.00838; mu= -6.5848+/- 0.567 mean_var=313.1112+/-76.485, 0's: 0 Z-trim: 12 B-trim: 0 in 0/40 Lambda= 0.072481 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0172 ( 1366 res) ha02512s1 (1366) 1101 129.4 2.7e-30 KIAA1334 ( 989 res) fh15842 ( 989) 230 38.2 0.0055 KIAA1250 ( 1777 res) pf01137 (1777) 233 38.8 0.0067 >>KIAA0172 ( 1366 res) ha02512s1 (1366 aa) initn: 1724 init1: 1026 opt: 1101 Z-score: 635.9 bits: 129.4 E(): 2.7e-30 Smith-Waterman score: 1101; 44.630% identity (73.508% similar) in 419 aa overlap (447-862:931-1346) 420 430 440 450 460 470 KIAA15 PAAATSNVHMVKKISITERSCDGAAGLPEVPAESSSSPPGSEVA-SLTQPEKSTGRVPTQ : :..: : .::. : .: .: ::: KIAA01 NPDFQKTSLGKITGNYLGYTCKCGGLQSGSPLSSQTSQPEQEVGTSEGKPISSLDAFPTQ 910 920 930 940 950 960 480 490 500 510 520 530 KIAA15 EPTHREPTRQAASQESEEAGGTGGPPAGVRSIMKRKEEVADPTAHRRSLQFVGVNGGYES : : :. . .: . . . . ..::::.:. : .. ...:::::.:::::. KIAA01 EGTLS-PVNLTDDQIAAGLYACTNNESTLKSIMKKKDGNKDSNGAKKNLQFVGINGGYET 970 980 990 1000 1010 540 550 560 570 580 590 KIAA15 -SSEDSSTAENISDNNSTENEAPE-PRERVPSVAEAPQLRPAGTAAAKTSRQECQLSRES ::.:::. :. :.... : .. : : :. : . : . . .. . . .: KIAA01 TSSDDSSSDESSSSESDDECDVIEYPLEE-EEEEEDEDTRGMAEGHHAVNIEGLKSARVE 1020 1030 1040 1050 1060 1070 600 610 620 630 640 650 KIAA15 QHIPTAEGASGSNTEEEIRMELSPDLISACLALEKYLDNPNALTERELKVAYTTVLQEWL ... . : ..: . :.::: ..::: :.. ...:.::: .... .:. .::. KIAA01 DEMQVQE-CEPEKVEIRERYELSEKMLSACNLLKNTINDPKALTSKDMRFCLNTLQHEWF 1080 1090 1100 1110 1120 1130 660 670 680 690 700 710 KIAA15 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD :.. ...: : .: ....:.:.: .: ::.:.::.::::::::::::.:: .:. ::: KIAA01 RVSSQKSAIPAMVGDYIAAFEAISPDVLRYVINLADGNGNTALHYSVSHSNFEIVKLLLD 1140 1150 1160 1170 1180 1190 720 730 740 750 760 770 KIAA15 SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVS . ::.::.::.:::.::::.:::..... :.. : .:: :..::::::::::::::::: KIAA01 ADVCNVDHQNKAGYTPIMLAALAAVEAEKDMRIVEELFGCGDVNAKASQAGQTALMLAVS 1200 1210 1220 1230 1240 1250 780 790 800 810 820 830 KIAA15 HGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGST :::.:.::.:::: ::::.:::.:::::::: :::: ::. :::: :.:. : : :::: KIAA01 HGRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNDGST 1260 1270 1280 1290 1300 1310 840 850 860 870 KIAA15 ALMVALDAGQSEIASMLYSRMNIKCSFAPMSDDESPTSSSAEE :: .::.::...:: .::...:. . .: KIAA01 ALSIALEAGHKDIAVLLYAHVNFAKAQSPGTPRLGRKTSPGPTHRGSFD 1320 1330 1340 1350 1360 >>KIAA1334 ( 989 res) fh15842 (989 aa) initn: 198 init1: 125 opt: 230 Z-score: 145.5 bits: 38.2 E(): 0.0055 Smith-Waterman score: 230; 27.879% identity (64.848% similar) in 165 aa overlap (689-853:59-216) 660 670 680 690 700 710 KIAA15 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK ::.:.::.: ...... .. .. :: KIAA13 DDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGV-D 30 40 50 60 70 80 720 730 740 750 760 770 KIAA15 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD : :. .:.: . :.: . . : . .:.. .....:.::: :...: .. KIAA13 VTAQDTTGHSALHLAAKNSHH-----ECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQ 90 100 110 120 130 140 780 790 800 810 820 830 KIAA15 VVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA .:. : .. .:..: ::. :. : ..::.:: .:: . :.. ...: ::::.: KIAA13 AVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLD-HGADVNSRNKSGRTALMLA 150 160 170 180 190 200 840 850 860 870 KIAA15 LDAGQSEIASMLYSRMNIKCSFAPMSDDESPTSSSAEE . :.:. . : .. KIAA13 CEIGSSNAVEALIKKGADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTK 210 220 230 240 250 260 >>KIAA1250 ( 1777 res) pf01137 (1777 aa) initn: 207 init1: 137 opt: 233 Z-score: 143.9 bits: 38.8 E(): 0.0067 Smith-Waterman score: 233; 32.704% identity (66.038% similar) in 159 aa overlap (702-857:155-304) 680 690 700 710 720 730 KIAA15 TFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIM ::. .:. ::..:. ::. ... : .:.. KIAA12 VVELLLSHGANPSVTGLYSVYPIIWAAGRGHAD--IVHLLLQNGA-KVNCSDKYGTTPLV 130 140 150 160 170 180 740 750 760 770 780 790 KIAA15 LTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN .: . .: : .:. .: . . ..:::..::. : .. :: .: . .:: KIAA12 WAA-----RKGHLECVKHLLAMGADVDQEGANSMTALIVAVKGGYTQSVKEILKRNPNVN 190 200 210 220 230 800 810 820 830 840 850 KIAA15 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML- . : ::.:::: : ..:: ::. :: . . ... ::.:.:.:. :. .:. ::. : KIAA12 LTDKDGNTALMIASKEGHTEIVQDLLDAGTY-VNIPDRSGDTVLIGAVRGGHVEIVRALL 240 250 260 270 280 290 860 870 KIAA15 --YSRMNIKCSFAPMSDDESPTSSSAEE :. ..:. KIAA12 QKYADIDIRGQDNKTALYWAVEKGNATMVRDILQCNPDTEICTKDGETPLIKATKMRNIE 300 310 320 330 340 350 876 residues in 1 query sequences 1986629 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:31 2008 done: Thu Dec 18 15:06:32 2008 Total Scan time: 0.630 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]