hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05085298/chunk_1/iprscan-20080502-05085298.nocrc
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Query sequence: KIAA1518
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 105.6    1.4e-28   4
PF00023.20.fs Ankyrin repeat                                  99.9    7.1e-27   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/4     691   724 ..     1    33 []    18.9  0.00028
PF00023.20.ls   1/4     691   724 ..     1    33 []    20.9   0.0044
PF00023.20.ls   2/4     763   795 ..     1    33 []    44.3  3.7e-10
PF00023.20.fs   2/4     763   795 ..     1    33 []    42.3  7.9e-11
PF00023.20.fs   3/4     796   829 ..     1    33 []    25.2  4.8e-06
PF00023.20.ls   3/4     796   829 ..     1    33 []    27.2  5.3e-05
PF00023.20.ls   4/4     830   859 ..     1    33 []    13.2     0.36
PF00023.20.fs   4/4     830   850 ..     1    21 [.    13.5   0.0091

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 4, from 691 to 724: score 18.9, E = 0.00028
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G+T+LH+ +++ n  vv+ Ll++  + ++ q++   
    KIAA1518   691    NGNTALHYSVSHANFPVVQQLLDsGVCKVDKQNR    724  

PF00023.20.ls: domain 1 of 4, from 691 to 724: score 20.9, E = 0.0044
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      +G+T+LH+ +++ n  vv+ Ll++  + ++ q++   
    KIAA1518   691    NGNTALHYSVSHANFPVVQQLLDsGVCKVDKQNR    724  

PF00023.20.ls: domain 2 of 4, from 763 to 795: score 44.3, E = 3.7e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA+++g+++vvk Ll + Ad+n+qdd   
    KIAA1518   763    AGQTALMLAVSHGRVDVVKALLACEADVNVQDD    795  

PF00023.20.fs: domain 2 of 4, from 763 to 795: score 42.3, E = 7.9e-11
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G+T+L+lA+++g+++vvk Ll + Ad+n+qdd   
    KIAA1518   763    AGQTALMLAVSHGRVDVVKALLACEADVNVQDD    795  

PF00023.20.fs: domain 3 of 4, from 796 to 829: score 25.2, E = 4.8e-06
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      dG T+L++A+++g++e++ lLl    +d+ ++d+   
    KIAA1518   796    DGSTALMCACEHGHKEIAGLLLAvPSCDISLTDR    829  

PF00023.20.ls: domain 3 of 4, from 796 to 829: score 27.2, E = 5.3e-05
                   *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-*
                      dG T+L++A+++g++e++ lLl    +d+ ++d+   
    KIAA1518   796    DGSTALMCACEHGHKEIAGLLLAvPSCDISLTDR    829  

PF00023.20.ls: domain 4 of 4, from 830 to 859: score 13.2, E = 0.36
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG T+L++A   g+ e++++L s     n++     
    KIAA1518   830    DGSTALMVALDAGQSEIASMLYS---RMNIKCS    859  

PF00023.20.fs: domain 4 of 4, from 830 to 850: score 13.5, E = 0.0091
                   *->dGfTPLHlAalrgnlevvklL<-*
                      dG T+L++A   g+ e++++L   
    KIAA1518   830    DGSTALMVALDAGQSEIASML    850  

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