hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05051527/chunk_1/iprscan-20080502-05051527.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1516 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00388.9.ls Phosphatidylinositol-specific phospholipa 245.2 1.3e-70 1 PF00388.9.fs Phosphatidylinositol-specific phospholipa 243.2 2.9e-70 1 PF00387.9.fs Phosphatidylinositol-specific phospholipa 155.4 1.4e-43 2 PF00387.9.ls Phosphatidylinositol-specific phospholipa 133.0 7.5e-37 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 77.6 3.7e-20 2 PF00788.13.fs Ras association (RalGDS/AF-6) domain 74.5 3.2e-19 2 PF00168.20.fs C2 domain 55.3 6.7e-16 1 PF00168.20.ls C2 domain 56.8 6.8e-14 1 PF09279.1.fs Phosphoinositide-specific phospholipase C 34.2 2.8e-09 1 PF00617.10.ls RasGEF domain -25.1 2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00617.10.ls 1/1 553 727 .. 1 227 [] -25.1 2e-06 PF09279.1.fs 1/1 1330 1381 .. 21 82 .. 34.2 2.8e-09 PF00388.9.ls 1/1 1395 1543 .. 1 153 [] 245.2 1.3e-70 PF00388.9.fs 1/1 1395 1543 .. 1 153 [] 243.2 2.9e-70 PF00387.9.ls 1/1 1746 1848 .. 1 128 [] 133.0 7.5e-37 PF00387.9.fs 2/2 1756 1848 .. 27 128 .] 141.5 2.1e-39 PF00168.20.fs 1/1 1873 1947 .. 1 77 [. 55.3 6.7e-16 PF00168.20.ls 1/1 1873 1955 .. 1 88 [] 56.8 6.8e-14 PF00788.13.ls 2/2 2137 2240 .. 1 97 [] 74.1 4.2e-19 PF00788.13.fs 2/2 2137 2240 .. 1 97 [] 72.1 1.6e-18 Alignments of top-scoring domains: PF00617.10.ls: domain 1 of 1, from 553 to 727: score -25.1, E = 2e-06 *->Llldple.lAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksf L +d+l l + L E + ++ +L ++ + KIAA1516 553 LPVDYLCfLTRDLGTPECQ-----SSLPCLK--------ASISASIL 586 kvkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRae + n+ + ++ +fN+++++v+ +Il + + ++++e KIAA1516 587 TTQNGEHNALEDLVMRFNEVSSWVTWLILTAG-----------SMEEKRE 625 viqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslkl v ++ ++VA c +N+n++++ +++L s + Lk W+ ++ + + KIAA1516 626 VFSYLVHVAKCCWNMGNYNAVMEFLAGLRSRKV--LKM-WQFMDQSDIET 672 IfeeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPC..VPFfGv +L+ m +++ +yR+++ + + +C+ VPF Gv KIAA1516 673 -MRSLKDAMAQHESSCEYRKVVTRALH-----------IPGCkvVPFCGV 710 YLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-* +L+ L + +G + + KIAA1516 711 FLKELCEVLDGASGLMK---------------- 727 PF09279.1.fs: domain 1 of 1, from 1330 to 1381: score 34.2, E = 2.8e-09 *->dLrrFLneeQrdprlNEiLyPpyteeqaleiIekYEpnegeakekgl +L +FL ++Q++ ++t ++ l iI+k+Ep+ + ++gl KIAA1516 1330 QLNDFLVNCQGE---------HCTYDEILSIIQKFEPSI-SMCHQGL 1366 LsldGFtrYLmSdeN<-* +s++GF r+Lm +eN KIAA1516 1367 MSFEGFARFLMDKEN 1381 PF00388.9.ls: domain 1 of 1, from 1395 to 1543: score 245.2, E = 1.3e-70 *->dmsiPLsHYfisSshntYLtgkQlwGkssvesYrqqLdaGcRcvELD ++ PLs+Y+i SshntYLtg+Ql+G+ssve Y q+L++GcR vELD KIAA1516 1395 ELQLPLSYYYIESSHNTYLTGHQLKGESSVELYSQVLLQGCRSVELD 1441 cwdGkpddepiIyHGhtltleiklkdVleaIkdfafkPtSpyPvIlSlen cwdG d++piIyHGhtlt++i++k+V+eaI af +S P+I+S+en KIAA1516 1442 CWDG-DDGMPIIYHGHTLTTKIPFKEVVEAIDRSAFI-NSDLPIIISIEN 1489 HcnsddqQrkmakyfkeiFgdmLltkPtldslttepglpLPslkdlrgKI Hc+ + qQrkma++fk++Fg++L+tk l+++ + LPs+++lr K KIAA1516 1490 HCSLP-QQRKMAEIFKTVFGEKLVTKF-LFETDFSDDPMLPSPDQLRKKV 1537 LLknkk<-* LLknkk KIAA1516 1538 LLKNKK 1543 PF00388.9.fs: domain 1 of 1, from 1395 to 1543: score 243.2, E = 2.9e-70 *->dmsiPLsHYfisSshntYLtgkQlwGkssvesYrqqLdaGcRcvELD ++ PLs+Y+i SshntYLtg+Ql+G+ssve Y q+L++GcR vELD KIAA1516 1395 ELQLPLSYYYIESSHNTYLTGHQLKGESSVELYSQVLLQGCRSVELD 1441 cwdGkpddepiIyHGhtltleiklkdVleaIkdfafkPtSpyPvIlSlen cwdG d++piIyHGhtlt++i++k+V+eaI af +S P+I+S+en KIAA1516 1442 CWDG-DDGMPIIYHGHTLTTKIPFKEVVEAIDRSAFI-NSDLPIIISIEN 1489 HcnsddqQrkmakyfkeiFgdmLltkPtldslttepglpLPslkdlrgKI Hc+ + qQrkma++fk++Fg++L+tk l+++ + LPs+++lr K KIAA1516 1490 HCSLP-QQRKMAEIFKTVFGEKLVTKF-LFETDFSDDPMLPSPDQLRKKV 1537 LLknkk<-* LLknkk KIAA1516 1538 LLKNKK 1543 PF00387.9.ls: domain 1 of 1, from 1746 to 1848: score 133.0, E = 7.5e-37 *->ElsnLvnYiqsikFrsFelsGeekntsyeisSFsErkvkakkllkes ls+++ ++ +y+isS++E+ +ak+l KIAA1516 1746 SLSAII-----------RTP-----KCYHISSLNEN--AAKRLCRRY 1774 pvefVkyNkrqLsRvYPkGtRvDSSNfmPqvfWnaGCQmVALNfQTsDlp + + ++ qL+R YP+ tR DSSN +P +fW G Q+VALN+QT Dlp KIAA1516 1775 SQKLTQHTACQLLRTYPAATRIDSSNPNPLMFWLHGIQLVALNYQTDDLP 1824 mqiNdGmFeyNggqPdGsfksGYlLKPeflR<-* + +N +mFe+Ngg +GY+LKP+ l KIAA1516 1825 LHLNAAMFEANGG-------CGYVLKPPVLW 1848 PF00387.9.fs: domain 2 of 2, from 1756 to 1848: score 141.5, E = 2.1e-39 *->syeisSFsErkvkakkllkespvefVkyNkrqLsRvYPkGtRvDSSN +y+isS++E+ +ak+l + + ++ qL+R YP+ tR DSSN KIAA1516 1756 CYHISSLNEN--AAKRLCRRYSQKLTQHTACQLLRTYPAATRIDSSN 1800 fmPqvfWnaGCQmVALNfQTsDlpmqiNdGmFeyNggqPdGsfksGYlLK +P +fW G Q+VALN+QT Dlp+ +N +mFe+Ngg +GY+LK KIAA1516 1801 PNPLMFWLHGIQLVALNYQTDDLPLHLNAAMFEANGG-------CGYVLK 1843 PeflR<-* P+ l KIAA1516 1844 PPVLW 1848 PF00168.20.fs: domain 1 of 1, from 1873 to 1947: score 55.3, E = 6.7e-16 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt ++t+++++n p +n++ +P +v ++g++ d+ ++Tk i+++ KIAA1516 1873 YSLTIVSGQNVCP---SNSMGSPCIEVDVLGMPLDsCHFRTKPIHRN 1916 .lNPvWNEtFtFevpppdlqetLeieVyDydr<-* +lNP WNE+F F v+++dl + L++ V ++++ KIAA1516 1917 tLNPMWNEQFLFRVHFEDLVF-LRFAVVENNS 1947 PF00168.20.ls: domain 1 of 1, from 1873 to 1955: score 56.8, E = 6.8e-14 *->LrVtvieAknLppkDkkngksDPYVkvylggdkkd.qkkkTkvikkt ++t+++++n p +n++ +P +v ++g++ d+ ++Tk i+++ KIAA1516 1873 YSLTIVSGQNVCP---SNSMGSPCIEVDVLGMPLDsCHFRTKPIHRN 1916 .lNPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* +lNP WNE+F F v+++dl + L++ V ++++ + + + KIAA1516 1917 tLNPMWNEQFLFRVHFEDLVF-LRFAVVENNSSA---VTAQRI 1955 PF00788.13.ls: domain 2 of 2, from 2137 to 2240: score 74.1, E = 4.2e-19 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgl.....d s+++ V++ + ++ ++i++++ +Ta++Vi++ L+K++++ + KIAA1516 2137 ESFFVQVHDVSPEQP-RTVIKAPRVSTAQDVIQQTLCKAKYsysilS 2182 addpedyvLvEvsl.......vlerggeerrvLpddEkPlqiqlqlkrda +++p dyvL E++++++++++ + +r vL+d+E+++q+q+ +k+ KIAA1516 2183 NPNPSDYVLLEEVVkdttnkkTTTPKSSQR-VLLDQECVFQAQSKWKG-- 2229 qrsrFlLrrred<-* + F+L+ +e+ KIAA1516 2230 -AGKFILKLKEQ 2240 PF00788.13.fs: domain 2 of 2, from 2137 to 2240: score 72.1, E = 1.6e-18 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgl.....d s+++ V++ + ++ ++i++++ +Ta++Vi++ L+K++++ + KIAA1516 2137 ESFFVQVHDVSPEQP-RTVIKAPRVSTAQDVIQQTLCKAKYsysilS 2182 addpedyvLvEvsl.......vlerggeerrvLpddEkPlqiqlqlkrda +++p dyvL E++++++++++ + +r vL+d+E+++q+q+ +k+ KIAA1516 2183 NPNPSDYVLLEEVVkdttnkkTTTPKSSQR-VLLDQECVFQAQSKWKG-- 2229 qrsrFlLrrred<-* + F+L+ +e+ KIAA1516 2230 -AGKFILKLKEQ 2240 //