hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05033873/chunk_1/iprscan-20080502-05033873.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1515 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 126.0 1.3e-40 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 42.9 1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00443.19.ls 1/1 1 359 [. 1 318 [] 42.9 1e-09 PF00443.19.fs 1/1 68 359 .. 166 318 .] 126.0 1.3e-40 Alignments of top-scoring domains: PF00443.19.ls: domain 1 of 1, from 1 to 359: score 42.9, E = 1e-09 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl KIAA1515 - ----------------------------------------------- - RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy + ++ +++++ +++ ++ ++ t+g++ + +gy KIAA1515 1 ----------IVIVMSFLKSlSLCLGKPFCNN-----ETFGQYPLQVNGY 35 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt + +L+e+l++ KIAA1515 36 R-------------NLDECLEG---------------------------- 44 RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx rnesiitdlFqGqlks...........klkikrLPpvLiihLKRFsynge +G+++ +++++ + ++ +++LPpvL++ L+RF++n + KIAA1515 45 -------AMVEGDVELlpsdhsvkygqERWFTKLPPVLTFELSRFEFNQS 87 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xx xxxxxxxxxx tglnkKiddkVefPleLdlssycnaelkekevlrkd.ek.ieklkeerqr +g+++Ki++k+efP ++++++y+ +++ +l +++ + i klkee KIAA1515 88 LGQPEKIHNKLEFPQIIYMDRYMYRSK----ELIRNkREcIRKLKEEIKI 133 RF .................................................. +++ ++ + ++++ + + ++ + + ++++ +++ +++++++ + KIAA1515 134 lqqkleryvkygsgparfplpdmlkyviefastkpasescppesdthmtl 183 RF .................................................. + ++ + + +++++++++++++++++ +++ ++++++ +++++ ++++++ KIAA1515 184 plssvhcsvsdqtskeststesssqdvestfsspedslpkskpltssrss 233 RF xxxxx xx xxx xxxx .................................dedgn.ne.eep.eeee + ++++ +++ ++++ + ++ ++ +++ ++d ++ + ++ + + e KIAA1515 234 mempsqpaprtvtdeeinfvktclqrwrseieqDIQDLkTCiASTtQTIE 283 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .dneegenpptkYeLyaVvvHsGsslssGHYiayikkkkengkWykfDDe + ++ + ++ Y+L+aV+vH G +++ GHY+ayi+ + +++ W+k++D KIAA1515 284 qMYCDPLLRQVPYRLHAVLVHEG-QANAGHYWAYIY-NQPRQSWLKYNDI 331 RF xxxxxxxxxxxx xxxxxxxxxx kVsevteeevle......rsssAYiLFY<-* +V+e++ eev++++ ++ r+ sAY L+Y KIAA1515 332 SVTESSWEEVERdsygglRNVSAYCLMY 359 PF00443.19.fs: domain 1 of 1, from 68 to 359: score 126.0, E = 1.3e-40 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdlssycnael +++LPpvL++ L+RF++n ++g+++Ki++k+efP ++++++y+ +++ KIAA1515 68 FTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSK 114 RF xxxxxxxxx xx xxxxxxxxxx kekevlrkd.ek.ieklkeerqr........................... +l +++ + i klkee +++ ++ + ++++ + + ++ + KIAA1515 115 ----ELIRNkREcIRKLKEEIKIlqqkleryvkygsgparfplpdmlkyv 160 RF .................................................. + ++++ +++ +++++++ + + ++ + + +++++++++++++++++ KIAA1515 161 iefastkpasescppesdthmtlplssvhcsvsdqtskeststesssqdv 210 RF .................................................. +++ ++++++ +++++ ++++++ + ++++ +++ ++++ + ++ ++ KIAA1515 211 estfsspedslpkskpltssrssmempsqpaprtvtdeeinfvktclqrw 260 RF xxxxx xx xxx xxxx xxxxxxxxxxxxxxxxxxxxxxxxxx ......dedgn.ne.eep.eeee.dneegenpptkYeLyaVvvHsGssls +++ ++d ++ + ++ + + e+ ++ + ++ Y+L+aV+vH G +++ KIAA1515 261 rseieqDIQDLkTCiASTtQTIEqMYCDPLLRQVPYRLHAVLVHEG-QAN 309 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxx sGHYiayikkkkengkWykfDDekVsevteeevle......rsssAYiLF GHY+ayi+ + +++ W+k++D +V+e++ eev++++ ++ r+ sAY L+ KIAA1515 310 AGHYWAYIY-NQPRQSWLKYNDISVTESSWEEVERdsygglRNVSAYCLM 358 RF x Y<-* Y KIAA1515 359 Y 359 //