hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04553024/chunk_1/iprscan-20080502-04553024.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1510 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00041.11.ls Fibronectin type III domain 267.0 3.6e-77 5 PF00041.11.fs Fibronectin type III domain 257.1 3.3e-74 5 PF00092.18.fs von Willebrand factor type A domain 229.6 5.7e-72 1 PF00092.18.ls von Willebrand factor type A domain 231.5 1.7e-66 1 PF01391.8.fs Collagen triple helix repeat (20 copies) 103.0 8.5e-28 3 PF01391.8.ls Collagen triple helix repeat (20 copies) 98.2 2.3e-26 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00092.18.fs 1/1 29 201 .. 1 195 [] 229.6 5.7e-72 PF00092.18.ls 1/1 29 201 .. 1 195 [] 231.5 1.7e-66 PF00041.11.fs 1/5 227 310 .. 1 84 [] 51.9 2.9e-14 PF00041.11.ls 1/5 227 310 .. 1 84 [] 53.9 5e-13 PF00041.11.ls 2/5 317 395 .. 1 84 [] 66.7 6.7e-17 PF00041.11.fs 2/5 317 395 .. 1 84 [] 64.8 5.6e-18 PF00041.11.ls 3/5 407 489 .. 1 84 [] 35.7 1.5e-07 PF00041.11.fs 3/5 407 489 .. 1 84 [] 33.7 4.7e-09 PF00041.11.ls 4/5 497 577 .. 1 84 [] 49.4 1.1e-11 PF00041.11.fs 4/5 497 577 .. 1 84 [] 47.4 5.7e-13 PF00041.11.ls 5/5 590 670 .. 1 84 [] 61.3 3e-15 PF00041.11.fs 5/5 590 670 .. 1 84 [] 59.3 2.2e-16 PF01391.8.ls 1/2 920 978 .. 1 60 [] 45.3 2e-10 PF01391.8.fs 1/3 921 978 .. 3 60 .] 43.2 9e-11 PF01391.8.ls 2/2 979 1038 .. 1 60 [] 52.9 9.7e-13 PF01391.8.fs 2/3 985 1041 .. 1 57 [. 52.4 3.3e-13 Alignments of top-scoring domains: PF00092.18.fs: domain 1 of 1, from 29 to 201: score 229.6, E = 5.7e-72 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+vFl+DgS+Sig+++ F++vkdF+++++ ++igpd+++Vgl qY KIAA1510 29 DMVFLVDGSWSIGHSH-FQQVKDFLASVIA-PFEIGPDKVQVGLTQY 73 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s+d++te++Ln+ s+k+++laav ++lry+gG+T+ tg+AL ++l + + KIAA1510 74 SGDAQTEWDLNSLSTKEQVLAAV-RRLRYKGGNTF-TGLALTHVLGQNLQ 121 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg + +ag Rp +a kv+il+TDGks+d+ v +aa +l+d g KIAA1510 122 P-------AAGLRP-EAAKVVILVTDGKSQDD--VHtAARVLKDL----G 157 itvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeql ++vfavGv +++deaeLr +as+p + +v v df + l ++ +l KIAA1510 158 VNVFAVGV-KNADEAELRlLASPP-RDITVHSVLDFLQ--LG--ALAGLL 201 <-* KIAA1510 - - PF00092.18.ls: domain 1 of 1, from 29 to 201: score 231.5, E = 1.7e-66 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+vFl+DgS+Sig+++ F++vkdF+++++ ++igpd+++Vgl qY KIAA1510 29 DMVFLVDGSWSIGHSH-FQQVKDFLASVIA-PFEIGPDKVQVGLTQY 73 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s+d++te++Ln+ s+k+++laav ++lry+gG+T+ tg+AL ++l + + KIAA1510 74 SGDAQTEWDLNSLSTKEQVLAAV-RRLRYKGGNTF-TGLALTHVLGQNLQ 121 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg + +ag Rp +a kv+il+TDGks+d+ v +aa +l+d g KIAA1510 122 P-------AAGLRP-EAAKVVILVTDGKSQDD--VHtAARVLKDL----G 157 itvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiqeql ++vfavGv +++deaeLr +as+p + +v v df + l ++ +l KIAA1510 158 VNVFAVGV-KNADEAELRlLASPP-RDITVHSVLDFLQ--LG--ALAGLL 201 <-* KIAA1510 - - PF00041.11.fs: domain 1 of 5, from 227 to 310: score 51.9, E = 2.9e-14 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk ++aPt l + vts+s++lsW+p+ ++ +Y + +R ++gg ++ KIAA1510 227 LPAPTSLVLSQVTSSSIRLSWTPA--PRHPLKYLIVWR-ASRGGTPR 270 eltvpgtttsytltgLkPgteYtvrVqAvnggG...GpeS<-* e+ v g++ s +l++L teY v+V + +gG ++G + KIAA1510 271 EVVVEGPAASTELHNLASRTEYLVSVFPIYEGGvgeGLRG 310 PF00041.11.ls: domain 1 of 5, from 227 to 310: score 53.9, E = 5e-13 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk ++aPt l + vts+s++lsW+p+ ++ +Y + +R ++gg ++ KIAA1510 227 LPAPTSLVLSQVTSSSIRLSWTPA--PRHPLKYLIVWR-ASRGGTPR 270 eltvpgtttsytltgLkPgteYtvrVqAvnggG...GpeS<-* e+ v g++ s +l++L teY v+V + +gG ++G + KIAA1510 271 EVVVEGPAASTELHNLASRTEYLVSVFPIYEGGvgeGLRG 310 PF00041.11.ls: domain 2 of 5, from 317 to 395: score 66.7, E = 6.7e-17 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. +++P+ lt +vt+ +++l+W+p+ + t+Y v++ +p+ +++++ KIAA1510 317 LPPPRALTLAAVTPRTVHLTWQPS---AGATHYLVRC-SPA-SPKge 358 ..wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++++e++v +++ + l gL+Pg++Y+v+Vq++ g + S KIAA1510 359 eeEREVQVGRPE--VLLDGLEPGRDYEVSVQSLRGP--EGS 395 PF00041.11.fs: domain 2 of 5, from 317 to 395: score 64.8, E = 5.6e-18 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge.. +++P+ lt +vt+ +++l+W+p+ + t+Y v++ +p+ +++++ KIAA1510 317 LPPPRALTLAAVTPRTVHLTWQPS---AGATHYLVRC-SPA-SPKge 358 ..wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* ++++e++v +++ + l gL+Pg++Y+v+Vq++ g + S KIAA1510 359 eeEREVQVGRPE--VLLDGLEPGRDYEVSVQSLRGP--EGS 395 PF00041.11.ls: domain 3 of 5, from 407 to 489: score 35.7, E = 1.5e-07 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk + +P+ l ++dv+ + +++ W+ + +p+ +vty ++ gg+ KIAA1510 407 LAPPRHLGFSDVSHDAARVFWEGA--PRPVRLVRVTY-VSSEGGHSG 450 eltvpgtttsytltgLkPgteYtvrVq.AvnggG.GpeS<-* + pg++ts++l L t+YtvrV+ + ggG++ + KIAA1510 451 QTEAPGNATSAMLGPLSSSTTYTVRVTcLYPGGGsSTLT 489 PF00041.11.fs: domain 3 of 5, from 407 to 489: score 33.7, E = 4.7e-09 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk + +P+ l ++dv+ + +++ W+ + +p+ +vty ++ gg+ KIAA1510 407 LAPPRHLGFSDVSHDAARVFWEGA--PRPVRLVRVTY-VSSEGGHSG 450 eltvpgtttsytltgLkPgteYtvrVq.AvnggG.GpeS<-* + pg++ts++l L t+YtvrV+ + ggG++ + KIAA1510 451 QTEAPGNATSAMLGPLSSSTTYTVRVTcLYPGGGsSTLT 489 PF00041.11.ls: domain 4 of 5, from 497 to 577: score 49.4, E = 1.1e-11 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk ++P++l+ t++ + ++l W ++ + + Y++t+ p ++g+ + KIAA1510 497 APSPSQLSMTELPGDAVQLAWVAAA-PSGVLVYQITW-TPLGEGKAH 541 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* e++vpg+ +++l gL +teY v++ A+ ++ G++S KIAA1510 542 EISVPGNLGTAVLPGLGRHTEYDVTILAYYRD-GARS 577 PF00041.11.fs: domain 4 of 5, from 497 to 577: score 47.4, E = 5.7e-13 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk ++P++l+ t++ + ++l W ++ + + Y++t+ p ++g+ + KIAA1510 497 APSPSQLSMTELPGDAVQLAWVAAA-PSGVLVYQITW-TPLGEGKAH 541 eltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* e++vpg+ +++l gL +teY v++ A+ ++ G++S KIAA1510 542 EISVPGNLGTAVLPGLGRHTEYDVTILAYYRD-GARS 577 PF00041.11.ls: domain 5 of 5, from 590 to 670: score 61.3, E = 3e-15 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. +s+P+nl + t++sl++sW+pP g + +Y +ty p++g ++ KIAA1510 590 SrSPPSNLALASETPDSLQVSWTPP--LGRVLHYWLTY-APASGLGp 633 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +k+++vpg +++tl +L++ t+Y v V A+ ++ ++S KIAA1510 634 EKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAA--GRS 670 PF00041.11.fs: domain 5 of 5, from 590 to 670: score 59.3, E = 2.2e-16 *->P.saPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpkngge. +s+P+nl + t++sl++sW+pP g + +Y +ty p++g ++ KIAA1510 590 SrSPPSNLALASETPDSLQVSWTPP--LGRVLHYWLTY-APASGLGp 633 wkeltvpgtttsytltgLkPgteYtvrVqAvnggGGpeS<-* +k+++vpg +++tl +L++ t+Y v V A+ ++ ++S KIAA1510 634 EKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAA--GRS 670 PF01391.8.ls: domain 1 of 2, from 920 to 978: score 45.3, E = 2e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp pGppGp GppG pG+ G pG++G+pGp+GppG +G+ G G pG KIAA1510 920 -TPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGL 965 pGppGapGapGpp<-* +G pG G pG + KIAA1510 966 QGHPGHQGIPGRV 978 PF01391.8.fs: domain 1 of 3, from 921 to 978: score 43.2, E = 9e-11 *->pGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGppG pGppGp GppG pG+ G pG++G+pGp+GppG +G+ G G pG +G KIAA1510 921 PGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQG 967 ppGapGapGpp<-* pG G pG + KIAA1510 968 HPGHQGIPGRV 978 PF01391.8.ls: domain 2 of 2, from 979 to 1038: score 52.9, E = 9.7e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G Gp G +G+ G +G pGppGp+G++G++G++G +G+ GppG Gp KIAA1510 979 GLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGP 1025 pGppGapGapGpp<-* G pG++G+ G+ KIAA1510 1026 TGLPGPKGERGEK 1038 PF01391.8.fs: domain 2 of 3, from 985 to 1041: score 52.4, E = 3.3e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G+ G +G+pGppGp+G++G aGa+G G +G+pG Gp G pGp KIAA1510 985 GMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGP 1031 pGppGapGap<-* +G++G++G+p KIAA1510 1032 KGERGEKGEP 1041 //