# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg02934mrp1.fasta.huge -Q ../query/KIAA1510.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1510, 1140 aa
 vs ./tmplib.25089 library

1986365 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.9779+/-0.00937; mu= -1.5956+/- 0.635
 mean_var=341.3580+/-84.130, 0's: 0 Z-trim: 5  B-trim: 9 in 1/39
 Lambda= 0.069418

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1870  ( 832 res)   hh05136b                    ( 832)  480 62.9 2.3e-10
KIAA1983  ( 418 res)   fk09737(revised)            ( 418)  295 44.0 5.6e-05


>>KIAA1870  ( 832 res)   hh05136b                         (832 aa)
 initn: 428 init1: 428 opt: 480  Z-score: 278.0  bits: 62.9 E(): 2.3e-10
Smith-Waterman score: 516;  40.586% identity (56.485% similar) in 239 aa overlap (920-1132:12-248)

     890       900       910       920       930       940         
KIAA15 ADEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRG
                                     ::: ::::::::  :  :  : .:  ::::
KIAA18                    GGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRG
                                  10        20        30        40 

     950       960          970          980       990             
KIAA15 PPGVKGEKGDHGL---PGLQGHPG---HQGIPGRVGLQGPKGMRGLEG------TAGLPG
       : :  ::.:..::   :: ::.::   .::. :. :  : .:. :. :      : ::::
KIAA18 PDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPG
              50        60        70        80        90       100 

      1000      1010      1020      1030      1040      1050       
KIAA15 PPGPRGFQGMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACES
        :::.: ::  :  :  : .::::.::  ::::  : .:. : : .      :..:  : 
KIAA18 EPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLG-PLGTPGEQGLIGQRGEP
             110       120       130       140        150       160

      1060        1070      1080      1090          1100      1110 
KIAA15 AIQTHVSKF--DSFHENTRPPMPILEQKLEPGTEPL----GSPGTRSKALVPGEWGRGGR
       ...   . .  :... .   : :  :.  : : : :    : ::  . . : :  :..:.
KIAA18 GLEGDSGPMGPDGLKGDRGDPGPDGEHG-EKGQEGLMGEDGPPGPPGVTGVRGPEGKSGK
              170       180        190       200       210         

                    1120      1130      1140                       
KIAA15 HLE-GR-------GEPGAVGQMGSPGQQGASTQGLWE                       
       . : ::       :  : .:.:: ::. :                               
KIAA18 QGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGL
     220       230       240       250       260       270         

>>KIAA1983  ( 418 res)   fk09737(revised)                 (418 aa)
 initn: 494 init1: 186 opt: 295  Z-score: 181.2  bits: 44.0 E(): 5.6e-05
Smith-Waterman score: 295;  51.685% identity (58.427% similar) in 89 aa overlap (921-1004:261-349)

              900       910       920       930       940       950
KIAA15 DEDRCCELPASRDGETCPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGP
                                     :: :: ::::: :: .:.::  :.::: : 
KIAA19 IALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQ
              240       250       260       270       280       290

              960            970       980       990      1000     
KIAA15 PGVKGEKGDHG-LPGL----QGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQ
       :: .:  :  :  : :    ::. :  : ::  : .: :: ::  :  : :::::   : 
KIAA19 PGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFL
              300       310       320       330       340       350

        1010      1020      1030      1040      1050      1060     
KIAA15 GMAGARGTSGERGPPGTVGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESAIQTHVSK
                                                                   
KIAA19 LLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYPEAMDLGSGDDHPRRTETRDL
              360       370       380       390       400       410




1140 residues in 1 query   sequences
1986365 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:09 2008 done: Thu Dec 18 15:06:09 2008
 Total Scan time:  0.720 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]