hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04492821/chunk_1/iprscan-20080502-04492821.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1506
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00249                                                 133.4    2.5e-35   3
SM00398                                                  26.8     0.0031   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/3     404   453 ..     1    39 []    49.3  5.2e-10
SM00249    2/3     454   500 ..     1    39 []    57.4  1.8e-12
SM00249    3/3     531   582 ..     1    39 []    26.7   0.0033
SM00398    1/1    1094  1158 ..     1    71 []    26.8   0.0031

Alignments of top-scoring domains:
SM00249: domain 1 of 3, from 404 to 453: score 49.3, E = 5.2e-10
                   *->yC.vCgk......g.llqCdkgCdrwyHv.Clgpple..epdg.wyC
                      +C vCg+ + + +g+ll C+ +C+++yH+ C++++ ++ + +++w+C
    KIAA1506   404    MCvVCGSfgqgaeGrLLACS-QCGQCYHPyCVSIKITkvVLSKgWRC 449  

                   prCk<-*
                    +C+   
    KIAA1506   450 LECT    453  

SM00249: domain 2 of 3, from 454 to 500: score 57.4, E = 1.8e-12
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C+ Cgk +++g+ll+Cd  Cd +yH+ Cl+ppl ++p+g+w+C++C
    KIAA1506   454    VCeACGKatdpGrLLLCD-DCDISYHTyCLDPPLQtVPKGgWKCKWC 499  

                   k<-*
                   +   
    KIAA1506   500 V    500  

SM00249: domain 3 of 3, from 531 to 582: score 26.7, E = 0.0033
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple.....epdg.w
                       C+vC ++ ++++ +lqC  +Cdrw H  C ++  e++ +++ d ++
    KIAA1506   531    SCpVCYRnyreeDlILQCR-QCDRWMHAvCQNLNTEeevenVADIgF 576  

                   yCprCk<-*
                    C+ C+   
    KIAA1506   577 DCSMCR    582  

SM00398: domain 1 of 1, from 1094 to 1158: score 26.8, E = 0.0031
                   *->kpKrPmsafmlFsqenRakikkenPdlknaeisKklgerWkeLseee
                      ++     a +l+ + n +++k+e+Pd  ++ + K+++++W++ s +e
    KIAA1506  1094    ATV----APVLYTNINFPNLKEEFPD--WTTRVKQIAKLWRKASSQE 1134 

                   KapYeekAekdkeryekempeykk<-*
                   +apY +kA++ ++  + ++    +   
    KIAA1506  1135 RAPYVQKARDNRAALRINKVQMSN    1158 

//