hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04492821/chunk_1/iprscan-20080502-04492821.nocrc
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Query sequence: KIAA1506
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00628.19.fs PHD-finger                                     119.4    6.8e-38   3
PF00628.19.ls PHD-finger                                     119.3      1e-32   3
PF00505.9.fs HMG (high mobility group) box                   21.6    2.3e-05   1
PF07649.3.ls C1-like domain                                  25.6    0.00016   2
PF00505.9.ls HMG (high mobility group) box                   12.4    0.00083   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/3     404   453 ..     1    49 [.    49.2  2.1e-15
PF00628.19.ls   1/3     404   455 ..     1    51 []    56.3  9.4e-14
PF00628.19.fs   2/3     454   502 ..     1    51 []    47.3    9e-15
PF00628.19.ls   2/3     456   502 ..     1    51 []    38.2  2.6e-08
PF00628.19.fs   3/3     531   584 ..     1    51 []    22.9  6.2e-07
PF00505.9.ls   1/1    1094  1157 ..     1    69 []    12.4  0.00083
PF00505.9.fs   1/1    1100  1153 ..    10    65 ..    21.6  2.3e-05

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 3, from 404 to 453: score 49.2, E = 2.1e-15
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.WyCp
                       C+vCg+ + +a+g+ll C +C++++H++C+++++++  + ++W C 
    KIAA1506   404    MCVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKgWRCL 450  

                   eCk<-*
                   eC+   
    KIAA1506   451 ECT    453  

PF00628.19.ls: domain 1 of 3, from 404 to 455: score 56.3, E = 9.4e-14
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.WyCp
                       C+vCg+ + +a+g+ll C +C++++H++C+++++++  + ++W C 
    KIAA1506   404    MCVVCGSFGQGAEGRLLACSQCGQCYHPYCVSIKITKVVLSKgWRCL 450  

                   eCkpk<-*
                   eC+ +   
    KIAA1506   451 ECTVC    455  

PF00628.19.fs: domain 2 of 3, from 454 to 502: score 47.3, E = 9e-15
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                       C  Cgk    ++g+ll+CD+Cd ++H++Cl+ppl+   +p+++W C
    KIAA1506   454    VCEACGK--ATDPGRLLLCDDCDISYHTYCLDPPLQ--TVPKggWKC 496  

                   peCkpk<-*
                   + C+ +   
    KIAA1506   497 KWCVWC    502  

PF00628.19.ls: domain 2 of 3, from 456 to 502: score 38.2, E = 2.6e-08
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                          Cgk    ++g+ll+CD+Cd ++H++Cl+ppl+   +p+++W C
    KIAA1506   456    --EACGK--ATDPGRLLLCDDCDISYHTYCLDPPLQ--TVPKggWKC 496  

                   peCkpk<-*
                   + C+ +   
    KIAA1506   497 KWCVWC    502  

PF00628.19.fs: domain 3 of 3, from 531 to 584: score 22.9, E = 6.2e-07
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.....
                       C+vC ++ + +++++lqC +Cdrw H+ C ++  e  e  e+  + 
    KIAA1506   531    SCPVCYRN-YREEDLILQCRQCDRWMHAVCQNLNTE--EEVEnvadi 574  

                   .WyCpeCkpk<-*
                   ++ C +C+p    
    KIAA1506   575 gFDCSMCRPY    584  

PF00505.9.ls: domain 1 of 1, from 1094 to 1157: score 12.4, E = 0.00083
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                         ++ A  l+ + +++++k+e+P+++    +k ++++W+  s +e+
    KIAA1506  1094    ---ATVAPVLYTNINFPNLKEEFPDWTTR--VKQIAKLWRKASSQER 1135 

                   apYeakAekeKarYekempeYk<-*
                   apY++kA+  +a  + ++ +     
    KIAA1506  1136 APYVQKARDNRAALRINKVQMS    1157 

PF00505.9.fs: domain 1 of 1, from 1100 to 1153: score 21.6, E = 2.3e-05
                   *->lfrqeqRakikaenPglsnaeIskklGekWkaLseeeKapYeakAek
                      l+ + +++++k+e+P+++    +k ++++W+  s +e+apY++kA+ 
    KIAA1506  1100    LYTNINFPNLKEEFPDWTTR--VKQIAKLWRKASSQERAPYVQKARD 1144 

                   eKarYekem<-*
                    +a  + ++   
    KIAA1506  1145 NRAALRINK    1153 

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