hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04461116/chunk_1/iprscan-20080502-04461116.nocrc
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Query sequence: KIAA1504
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06839.3.ls GRF zinc finger                                 83.4    6.5e-22   1
PF06839.3.fs GRF zinc finger                                 81.4    7.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06839.3.fs   1/1     351   399 ..     1    52 []    81.4  7.1e-22
PF06839.3.ls   1/1     351   399 ..     1    52 []    83.4  6.5e-22

Alignments of top-scoring domains:
PF06839.3.fs: domain 1 of 1, from 351 to 399: score 81.4, E = 7.1e-22
                   *->plCpnCGaqlaviltvrKtGpNpGRqFYkCPvgrekqkTrkqCgFFq
                      plC+ CG +++++l+v+++GpN+G++FY+CP g+++   rk+Cg+F+
    KIAA1504   351    PLCK-CG-RRSKRLVVSNNGPNHGKVFYCCPIGKYQEN-RKCCGYFK 394  

                   WeDen<-*
                   We++    
    KIAA1504   395 WEQTL    399  

PF06839.3.ls: domain 1 of 1, from 351 to 399: score 83.4, E = 6.5e-22
                   *->plCpnCGaqlaviltvrKtGpNpGRqFYkCPvgrekqkTrkqCgFFq
                      plC+ CG +++++l+v+++GpN+G++FY+CP g+++   rk+Cg+F+
    KIAA1504   351    PLCK-CG-RRSKRLVVSNNGPNHGKVFYCCPIGKYQEN-RKCCGYFK 394  

                   WeDen<-*
                   We++    
    KIAA1504   395 WEQTL    399  

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