hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04372158/chunk_1/iprscan-20080502-04372158.nocrc
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Query sequence: KIAA1500
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00237                                                 228.9    4.4e-64   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00237    1/5     770   878 ..     1   106 []    54.8  1.1e-11
SM00237    2/5     891  1002 ..     1   106 []    38.6  8.5e-07
SM00237    3/5    1017  1122 ..     1   106 []    50.0  3.1e-10
SM00237    4/5    1137  1239 ..     1   106 []    22.1   0.0051
SM00237    5/5    1257  1361 ..     1   106 []    63.3    3e-14

Alignments of top-scoring domains:
SM00237: domain 1 of 5, from 770 to 878: score 54.8, E = 1.1e-11
                   *->atvtilDddhagtvgFeqphytVsEsdGevevtVvRtggtargtvvV
                      ++ + +   + + ++F    y+VsE +G+v vtV+Rtg+ ++ +++V
    KIAA1500   770    VVSDNVFHIQWSLISFKYTSYNVSEKAGSVSVTVQRTGN-LNQYAIV 815  

                   pyrTedGTAt.........aGgsDYepvdIeGtLtFepgegtekeIriki
                     rTe GTA+++++ ++++++ +DY+    +G+++F+  e + k  +i i
    KIAA1500   816 LCRTEQGTASsssrvssqpGQ-QDYVEY--AGQVQFDERE-DTKSCTIVI 861  

                   idDdiyEerdEtFyvrLs<-*
                    dDd++E   E+F+v+Ls   
    KIAA1500   862 NDDDVFEN-VESFTVELS    878  

SM00237: domain 2 of 5, from 891 to 1002: score 38.6, E = 8.5e-07
                   *->atvtilDddhagtvgFeqphytVsEsdGevevtVvRtggtargtvvV
                      a v+i D  +  t++F+   y V+Es+G +  +++R+g+ a++ v+ 
    KIAA1500   891    AKVIINDTEDEPTLEFDKKIYWVNESAGFLFAPIERKGD-ASSIVSA 936  

                   pyrTedGTAtaGgsDYepvdIeGt............LtFepgegtekeIr
                     +T+  +A++  s Y+     G++ ++++ +  ++++F+pg  t+ + +
    KIAA1500   937 ICYTVPKSAMGS-SLYALE--SGSdfksrgmsaasrVIFGPGV-TMSTCD 982  

                   ikiidDdiyEerdEtFyvrLs<-*
                   + +idD++yEe +E F + L    
    KIAA1500   983 VMLIDDSEYEE-EEEFEIALA    1002 

SM00237: domain 3 of 5, from 1017 to 1122: score 50.0, E = 3.1e-10
                   *->atvtilDddhagtvgFeqphytVsEsdGevevtVvRtggtargtvvV
                       + +  ++d a+tv++ + ++tVsE +G+v ++V+R+g +++++++V
    KIAA1500  1017    KVLISGPND-ASTVSLGNTAFTVSEDAGTVKIPVIRHGTDLSTFASV 1062 

                   pyrTedG...TAtaGgsDYepvdIeGtLtFepgegtekeIrikiidDd..
                      T   ++ +At G +DY+p      ++F+pg   e++ +  i+dD + 
    KIAA1500  1063 WCATRPSdpaSATPG-VDYVPS--SRKVEFGPGV-IEQYCTLTILDDTqy 1108 

                   .iyEerdEtFyvrLs<-*
                   +++E+  EtF++ Ls   
    KIAA1500  1109 pVIEG-LETFVFFLS    1122 

SM00237: domain 4 of 5, from 1137 to 1239: score 22.1, E = 0.0051
                   *->atvtilDddhagtvgFeqphytVsEsdGevevtVvRtggtargtvvV
                       ++ +  +d + +++F+     V+E  G++ v+++R+g+ ++   +V
    KIAA1500  1137    IAINDTFQD-VPSMQFAKDLLLVKEKEGVLHVPITRSGD-LSYESSV 1181 

                   pyrTedGTAtaGgsDYep...vdIeGtLtFepgegtekeIrikiidDdiy
                   + +T++ +A+    D+e ++++d    +tF  g+  +k  ++ i dD+++
    KIAA1500  1182 RCYTQSHSAQVM-EDFEErqnAD-SSRITFLKGD-KVKNCTVYIHDDSMF 1228 

                   EerdEtFyvrLs<-*
                   E  +E+F+v L+   
    KIAA1500  1229 EP-EEQFRVYLG    1239 

SM00237: domain 5 of 5, from 1257 to 1361: score 63.3, E = 3e-14
                   *->atvtilDddhagtvgFeqphytVsEsdGe.....vevtVvRtggtar
                      at+ti  d +a t++Fe+++y+V E +G +    + ++V+R+g+  +
    KIAA1500  1257    ATITISNDEDAPTIEFEEAAYQVREPAGPdaiaiLNIKVIRRGD-QN 1302 

                   gtvvVpyrTedGTAtaGgsDYepvdIeGtLtFepgegtekeIrikiidDd
                    t  V+ +T dG+A+ G +DY p     +L F pg  ++ +++++i+  +
    KIAA1500  1303 RTSKVRCSTRDGSAQSG-VDYYPK--SRVLKFSPGV-DHIFFKVEILSNE 1348 

                   iyEerdEtFyvrLs<-*
                     E  +E+F ++L+   
    KIAA1500  1349 DREW-HESFSLVLG    1361 

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