hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04372158/chunk_1/iprscan-20080502-04372158.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1500 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03160.5.fs Calx-beta domain 222.1 1.2e-63 7 PF03160.5.ls Calx-beta domain 218.2 1.7e-62 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03160.5.ls 1/5 771 878 .. 1 109 [] 57.5 4.2e-14 PF03160.5.fs 1/7 783 878 .. 14 109 .] 57.9 4.1e-15 PF03160.5.fs 2/7 891 935 .. 1 50 [. 15.3 0.0015 PF03160.5.ls 2/5 891 1002 .. 1 109 [] 30.2 6.8e-06 PF03160.5.fs 3/7 970 1002 .. 76 109 .] 23.5 9.2e-06 PF03160.5.ls 3/5 1016 1122 .. 1 109 [] 38.6 2e-08 PF03160.5.fs 4/7 1016 1108 .. 1 98 [. 36.8 2.2e-09 PF03160.5.ls 4/5 1137 1239 .. 1 109 [] 17.0 9e-05 PF03160.5.fs 5/7 1137 1239 .. 1 109 [] 15.1 0.0018 PF03160.5.ls 5/5 1257 1361 .. 1 109 [] 74.9 2.3e-19 PF03160.5.fs 6/7 1257 1361 .. 1 109 [] 73.0 3.2e-19 Alignments of top-scoring domains: PF03160.5.ls: domain 1 of 5, from 771 to 878: score 57.5, E = 4.2e-14 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr + ++++ + ++F t y+V E G+v v+V r+g+ l+ KIAA1500 771 VSDNVFHI-QWSLISFKYTSYNV--SEKAGSVSVTVQRTGN---LNQ 811 tVtVsyrTeDGTA.......taGPg.sDYeptegtiLtFgPgedtekcin + +V rTe GTA+++++ +++ Pg++DY+ +g+ ++F+ e + k KIAA1500 812 YAIVLCRTEQGTAssssrvsSQ-PGqQDYVEYAGQ-VQFDERE-DTKSCT 858 vtiiDDdvyEgdEnFfvrLs<-* + i+DDdv+E+ E F+v+Ls KIAA1500 859 IVINDDDVFENVESFTVELS 878 PF03160.5.fs: domain 1 of 7, from 783 to 878: score 57.9, E = 4.1e-15 *->vgFeptvyqVsVlEndGevevcVvrmggapelrrtVtVsyrTeDGTA ++F t y+V E G+v v+V r+g+ l+ + +V rTe GTA KIAA1500 783 ISFKYTSYNV--SEKAGSVSVTVQRTGN---LNQYAIVLCRTEQGTA 824 .......taGPg.sDYeptegtiLtFgPgedtekcinvtiiDDdvyEgdE +++++ +++ Pg++DY+ +g+ ++F+ e + k + i+DDdv+E+ E KIAA1500 825 ssssrvsSQ-PGqQDYVEYAGQ-VQFDERE-DTKSCTIVINDDDVFENVE 871 nFfvrLs<-* F+v+Ls KIAA1500 872 SFTVELS 878 PF03160.5.fs: domain 2 of 7, from 891 to 935: score 15.3, E = 0.0015 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr a v+I D d+++++F+ y V +E+ G+ ++r+g+ +++ KIAA1500 891 AKVIINDTEDEPTLEFDKKIYWV--NESAGFLFAPIERKGD---ASS 932 tVt<-* V+ KIAA1500 933 IVS 935 PF03160.5.ls: domain 2 of 5, from 891 to 1002: score 30.2, E = 6.8e-06 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr a v+I D d+++++F+ y V +E+ G+ ++r+g+ +++ KIAA1500 891 AKVIINDTEDEPTLEFDKKIYWV--NESAGFLFAPIERKGD---ASS 932 tVtVsyrTeDGTAtaG.P.....gsDYep..tegt.iLtFgPgedtekci V+ T+ +A++ ++ ++gsD+ ++++++ + ++FgPg+ t+ + KIAA1500 933 IVSAICYTVPKSAMGSsLyalesGSDFKSrgMSAAsRVIFGPGV-TMSTC 981 nvtiiDDdvyEgdEnFfvrLs<-* +v +iDD++yE+ E F + L+ KIAA1500 982 DVMLIDDSEYEEEEEFEIALA 1002 PF03160.5.fs: domain 3 of 7, from 970 to 1002: score 23.5, E = 9.2e-06 *->LtFgPgedtekcinvtiiDDdvyEgdEnFfvrLs<-* ++FgPg+ t+ + +v +iDD++yE+ E F + L+ KIAA1500 970 VIFGPGV-TMSTCDVMLIDDSEYEEEEEFEIALA 1002 PF03160.5.ls: domain 3 of 5, from 1016 to 1122: score 38.6, E = 2e-08 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr a v I+ ++da++v++ +t ++V E+ G+v + V+r+g +l++ KIAA1500 1016 AKVLISGPNDASTVSLGNTAFTV--SEDAGTVKIPVIRHGT--DLST 1058 tVtVsyrT..eD.GTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiD +V T++ D+ +At G +DY+p + + FgPg+ e+ +ti+D KIAA1500 1059 FASVWCATrpSDpASATPG--VDYVPSSRK-VEFGPGV-IEQYCTLTILD 1104 Ddvy...EgdEnFfvrLs<-* D y+ Eg E+F+ Ls KIAA1500 1105 DTQYpviEGLETFVFFLS 1122 PF03160.5.fs: domain 4 of 7, from 1016 to 1108: score 36.8, E = 2.2e-09 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr a v I+ ++da++v++ +t ++V E+ G+v + V+r+g +l++ KIAA1500 1016 AKVLISGPNDASTVSLGNTAFTV--SEDAGTVKIPVIRHGT--DLST 1058 tVtVsyrT..eD.GTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiD +V T++ D+ +At G +DY+p + + FgPg+ e+ +ti+D KIAA1500 1059 FASVWCATrpSDpASATPG--VDYVPSSRK-VEFGPGV-IEQYCTLTILD 1104 Ddvy<-* D y KIAA1500 1105 DTQY 1108 PF03160.5.ls: domain 4 of 5, from 1137 to 1239: score 17.0, E = 9e-05 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr +++++ d+++++F V +E G+ v ++r g+ l+ KIAA1500 1137 IAINDTFQ-DVPSMQFAKDLLLV--KEKEGVLHVPITRSGD---LSY 1177 tVtVsyrTeDGTAtaGPgsDYep.tegt..iLtFgPgedtekcinvtiiD + +V T+ +A+ D+e +++++++ +tF g ++k v i D KIAA1500 1178 ESSVRCYTQSHSAQVM--EDFEErQNADssRITFLKGD-KVKNCTVYIHD 1224 DdvyEgdEnFfvrLs<-* D+++E+ E+F v L+ KIAA1500 1225 DSMFEPEEQFRVYLG 1239 PF03160.5.fs: domain 5 of 7, from 1137 to 1239: score 15.1, E = 0.0018 *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr +++++ d+++++F V +E G+ v ++r g+ l+ KIAA1500 1137 IAINDTFQ-DVPSMQFAKDLLLV--KEKEGVLHVPITRSGD---LSY 1177 tVtVsyrTeDGTAtaGPgsDYep.tegt..iLtFgPgedtekcinvtiiD + +V T+ +A+ D+e +++++++ +tF g ++k v i D KIAA1500 1178 ESSVRCYTQSHSAQVM--EDFEErQNADssRITFLKGD-KVKNCTVYIHD 1224 DdvyEgdEnFfvrLs<-* D+++E+ E+F v L+ KIAA1500 1225 DSMFEPEEQFRVYLG 1239 PF03160.5.ls: domain 5 of 5, from 1257 to 1361: score 74.9, E = 2.3e-19 *->atvtIlDdddagvvgFeptvyqVsVlE.....ndGevevcVvrmgga at+tI+ d da++++Fe++ yqV E+ ++++++ ++V+r+g+ KIAA1500 1257 ATITISNDEDAPTIEFEEAAYQV--REpagpdAIAILNIKVIRRGD- 1300 pelrrtVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvti +rt V +T DG+A+ G +DY p++ + L F+Pg+ ++++++v+i KIAA1500 1301 --QNRTSKVRCSTRDGSAQSG--VDYYPKSRV-LKFSPGV-DHIFFKVEI 1344 iDDdvyEgdEnFfvrLs<-* + + E +E F+++L+ KIAA1500 1345 LSNEDREWHESFSLVLG 1361 PF03160.5.fs: domain 6 of 7, from 1257 to 1361: score 73.0, E = 3.2e-19 *->atvtIlDdddagvvgFeptvyqVsVlE.....ndGevevcVvrmgga at+tI+ d da++++Fe++ yqV E+ ++++++ ++V+r+g+ KIAA1500 1257 ATITISNDEDAPTIEFEEAAYQV--REpagpdAIAILNIKVIRRGD- 1300 pelrrtVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvti +rt V +T DG+A+ G +DY p++ + L F+Pg+ ++++++v+i KIAA1500 1301 --QNRTSKVRCSTRDGSAQSG--VDYYPKSRV-LKFSPGV-DHIFFKVEI 1344 iDDdvyEgdEnFfvrLs<-* + + E +E F+++L+ KIAA1500 1345 LSNEDREWHESFSLVLG 1361 //