hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04354575/chunk_1/iprscan-20080502-04354575.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1499 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05021.5.ls NPL4 family 728.1 5.6e-216 1 PF05021.5.fs NPL4 family 726.1 2.1e-215 1 PF05020.5.fs NPL4 family, putative zinc binding region 417.8 2.7e-126 1 PF05020.5.ls NPL4 family, putative zinc binding region 419.8 3.6e-123 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05020.5.fs 1/1 147 289 .. 1 149 [] 417.8 2.7e-126 PF05020.5.ls 1/1 147 289 .. 1 149 [] 419.8 3.6e-123 PF05021.5.fs 1/1 291 600 .. 1 338 [] 726.1 2.1e-215 PF05021.5.ls 1/1 291 600 .. 1 338 [] 728.1 5.6e-216 Alignments of top-scoring domains: PF05020.5.fs: domain 1 of 1, from 147 to 289: score 417.8, E = 2.7e-126 *->rViEDevDqeLeKeDGlIkRsrDskLCrHGpkGmCvyCSPLEPyDEs +V+EDe+Dq+L+K+DG+I+RsrD++LCrHGp+G+Cv+C+PLEP+DE+ KIAA1499 147 NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDED 193 YLnhkEnkIKHlSFHaYlRKlnsnanKkesGksfIspLeeisfrIKegCh YLnh+E+++KH+SFHaY+RKl+++a+K Gk++ +Le+is++IK+gC KIAA1499 194 YLNHLEPPVKHMSFHAYIRKLTGGADK---GKFV--ALENISCKIKSGC- 237 eGHpPWPkGICsKCQPSAITLNrQefRhVDhveFenseIvdrFLnaWRkT eGH+PWP+GIC+KCQPSAITLNrQ++RhVD+++Fen++++drFL++WRkT KIAA1499 238 EGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKT 287 Gf<-* G+ KIAA1499 288 GN 289 PF05020.5.ls: domain 1 of 1, from 147 to 289: score 419.8, E = 3.6e-123 *->rViEDevDqeLeKeDGlIkRsrDskLCrHGpkGmCvyCSPLEPyDEs +V+EDe+Dq+L+K+DG+I+RsrD++LCrHGp+G+Cv+C+PLEP+DE+ KIAA1499 147 NVVEDEIDQYLSKQDGKIYRSRDPQLCRHGPLGKCVHCVPLEPFDED 193 YLnhkEnkIKHlSFHaYlRKlnsnanKkesGksfIspLeeisfrIKegCh YLnh+E+++KH+SFHaY+RKl+++a+K Gk++ +Le+is++IK+gC KIAA1499 194 YLNHLEPPVKHMSFHAYIRKLTGGADK---GKFV--ALENISCKIKSGC- 237 eGHpPWPkGICsKCQPSAITLNrQefRhVDhveFenseIvdrFLnaWRkT eGH+PWP+GIC+KCQPSAITLNrQ++RhVD+++Fen++++drFL++WRkT KIAA1499 238 EGHLPWPNGICTKCQPSAITLNRQKYRHVDNIMFENHTVADRFLDFWRKT 287 Gf<-* G+ KIAA1499 288 GN 289 PF05021.5.fs: domain 1 of 1, from 291 to 600: score 726.1, E = 2.1e-215 *->RfGylYGrytehknvPLGIkavVeAIYEPPQvgteDgleLleDadee +fGylYGrytehk++PLGI+a+V+AIYEPPQ+gt+++leLleD+++e KIAA1499 291 HFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAE 337 erLqVDaiAegLGLrRVGlIFTDlvdadsaeGtVlykRHkDsYFLSseEV + VD+iA +LGLr+VG+IFTDlv++d+++GtV+y+R+kD+YFLSseE+ KIAA1499 338 V---VDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEEC 384 itAAelQtkHPNickySedghfgSKfVTlVisGdlsgeVhfesYQVSnqC itA+++Q+kHPN c++S+dghfgSKfVT+V++G+++++Vhfe+YQVSnqC KIAA1499 385 ITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQC 434 vaLvkadllETEippkddPeLayvkkevverehYVPDVfYkkkdkYGkev +aLv++++l +p+kd+PeL+y+k++++e+ YVPDVfYk+ dk+G+e+ KIAA1499 435 MALVRDECL---LPCKDAPELGYAKESSSEQ--YVPDVFYKDVDKFGNEI 479 keNAkPAlPVdyLLVdvtigfPktDtePdytFsvstsgplSakFpiENRd +++A+P lPV+yL++d+t++fPk +P+ytFs+s++ p FpiENRd KIAA1499 480 TQLARP-LPVEYLIIDITTTFPK---DPVYTFSISQN-P----FPIENRD 520 alGqlqdmaaLktylsrakssGDFnpflekiSnFHLLLyiatllilspld +lG++qd+++L+tyls+++s ++fl++iS+FHLLL+++t++++ pl+ KIAA1499 521 VLGETQDFHSLATYLSQNTS----SVFLDTISDFHLLLFLVTNEVM-PLQ 565 ewvplLleAVkardeelalkwakelQSvVsegwalLiella<-* ++++lLleAV++r+eela++w++ se+wa++++l++ KIAA1499 566 DSISLLLEAVRTRNEELAQTWKR------SEQWATIEQLCS 600 PF05021.5.ls: domain 1 of 1, from 291 to 600: score 728.1, E = 5.6e-216 *->RfGylYGrytehknvPLGIkavVeAIYEPPQvgteDgleLleDadee +fGylYGrytehk++PLGI+a+V+AIYEPPQ+gt+++leLleD+++e KIAA1499 291 HFGYLYGRYTEHKDIPLGIRAEVAAIYEPPQIGTQNSLELLEDPKAE 337 erLqVDaiAegLGLrRVGlIFTDlvdadsaeGtVlykRHkDsYFLSseEV + VD+iA +LGLr+VG+IFTDlv++d+++GtV+y+R+kD+YFLSseE+ KIAA1499 338 V---VDEIAAKLGLRKVGWIFTDLVSEDTRKGTVRYSRNKDTYFLSSEEC 384 itAAelQtkHPNickySedghfgSKfVTlVisGdlsgeVhfesYQVSnqC itA+++Q+kHPN c++S+dghfgSKfVT+V++G+++++Vhfe+YQVSnqC KIAA1499 385 ITAGDFQNKHPNMCRLSPDGHFGSKFVTAVATGGPDNQVHFEGYQVSNQC 434 vaLvkadllETEippkddPeLayvkkevverehYVPDVfYkkkdkYGkev +aLv++++l +p+kd+PeL+y+k++++e+ YVPDVfYk+ dk+G+e+ KIAA1499 435 MALVRDECL---LPCKDAPELGYAKESSSEQ--YVPDVFYKDVDKFGNEI 479 keNAkPAlPVdyLLVdvtigfPktDtePdytFsvstsgplSakFpiENRd +++A+P lPV+yL++d+t++fPk +P+ytFs+s++ p FpiENRd KIAA1499 480 TQLARP-LPVEYLIIDITTTFPK---DPVYTFSISQN-P----FPIENRD 520 alGqlqdmaaLktylsrakssGDFnpflekiSnFHLLLyiatllilspld +lG++qd+++L+tyls+++s ++fl++iS+FHLLL+++t++++ pl+ KIAA1499 521 VLGETQDFHSLATYLSQNTS----SVFLDTISDFHLLLFLVTNEVM-PLQ 565 ewvplLleAVkardeelalkwakelQSvVsegwalLiella<-* ++++lLleAV++r+eela++w++ se+wa++++l++ KIAA1499 566 DSISLLLEAVRTRNEELAQTWKR------SEQWATIEQLCS 600 //