# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj08986.fasta.huge -Q ../query/KIAA1495.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1495, 502 aa
 vs ./tmplib.24314 library

1987003 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.4779+/-0.00713; mu= 9.1828+/- 0.484
 mean_var=197.0211+/-46.063, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.091373

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1016  ( 793 res)   hk03719s1                   ( 793)  631 95.7 1.3e-20


>>KIAA1016  ( 793 res)   hk03719s1                        (793 aa)
 initn: 990 init1: 556 opt: 631  Z-score: 462.2  bits: 95.7 E(): 1.3e-20
Smith-Waterman score: 993;  41.036% identity (63.944% similar) in 502 aa overlap (1-491:315-752)

                                             10        20        30
KIAA14                               VCYRKLHHLQVIILDNNPLQVPPAQICLKG
                                     .:.:....:::..:.::::: :::::: ::
KIAA10 RNYLKVLPQELVDLPLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKG
          290       300       310       320       330       340    

               40        50        60        70        80        90
KIAA14 KVHIFKYLNIQACCRMDKKPDSLDLPSLSKRMPSQPLTDSMEDFYPNKNHGPDSGIGSDN
       ::::::::.::::  . :  ::: : .. .    : . :. .:         :::.::::
KIAA10 KVHIFKYLSIQAC--QIKTADSLYLHTMERPHLHQHVEDGKKD--------SDSGVGSDN
          350         360       370       380               390    

              100       110        120       130       140         
KIAA14 GEKRLSTTEPSDDDTVSLHSQVSE-SNREQTSRNDSHIIGSKTDSQKDQEVY-------D
       :.::::.:::::.:::::.  .:.  ..::  ..::    : . ..  ::         :
KIAA10 GDKRLSATEPSDEDTVSLNVPMSNIMEEEQIIKEDSCHRLSPVKGEFHQEFQPEPSLLGD
          400       410       420       430       440       450    

            150       160       170       180       190         200
KIAA14 FVDPNTEDVAVPEQGNAHIGSFVSFFKGKEKCSEKSRKNEELGDEKRLEKEQLLA--EEE
        .. . :     .....  . :...    : : :  : .:..    . . : ...  ...
KIAA10 STNSGEERDQFTDRADGLHSEFMNYKARAEDCEELLRIEEDV----HWQTEGIISSSKDQ
          460       470       480       490           500       510

              210       220       230       240       250       260
KIAA14 DDDLKEVTDLRKIAAQLLQQEQKNRILNHSTSVMRNKPKQTVECEKSVSADEVNSPLSPL
       : :.  . .::. :..:::. .     . ::..           :.::    .:  : :.
KIAA10 DMDIAMIEQLRE-AVDLLQDPN-----GLSTDIT----------ERSV----LN--LYPM
              520        530                      540              

               270       280       290       300       310         
KIAA14 -TWQPLENQKDQIDEQPWPESHPIIWQSEERRRSKQIRKEYFKYKSMRKSSSGNENDEQD
        . . :: : . .. :   :. :.           .....      .  .:.:.    : 
KIAA10 GSAEALELQDSALNGQIQLETSPVC----------EVQSD------LTLQSNGS----QY
      550       560       570                       580            

     320       330       340       350       360       370         
KIAA14 SDNANMSTQSPVSSEEYDRTDGFSHSPFGLKPRSAFSRSSRQEYGAADPGFTMRRKMEHL
       : : ..  .::. :   . :     .::::::::.: : .:.   . :: ::.:::::..
KIAA10 SPN-EIRENSPAVSPTTNST-----APFGLKPRSVFLRPQRN-LESIDPQFTIRRKMEQM
      590        600            610       620        630       640 

     380       390       400       410       420       430         
KIAA14 REEREQIRQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPK
       :::.: ..:::...: :::: : .:.:::::::::::::.::::::::::::::::::::
KIAA10 REEKELVEQLRESIEMRLKVSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPK
             650       660       670       680       690       700 

     440       450       460       470       480       490         
KIAA14 LSMAKCRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQL
       ::::::::::::::.::.:::: .  :: :  ::.   . ..  ::..:: :        
KIAA10 LSMAKCRRNVENFLEACRKLGVPEADLCSPCDILQL-DFRHIRKTVDTLLALGEKAPPPT
             710       720       730        740       750       760

     500                                
KIAA14 SVA                              
                                        
KIAA10 SALRSRDLIGFCLVHILFIVLVYITYHWNALSA
              770       780       790   




502 residues in 1 query   sequences
1987003 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:43 2008 done: Thu Dec 18 15:24:43 2008
 Total Scan time:  0.450 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]