hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04272667/chunk_1/iprscan-20080502-04272667.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1494
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00326                                                 143.2    2.8e-38   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/2     198   255 ..     1    58 []    79.5    4e-19
SM00326    2/2     582   638 .]     1    58 []    63.6  2.4e-14

Alignments of top-scoring domains:
SM00326: domain 1 of 2, from 198 to 255: score 79.5, E = 4e-19
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       ++vA+Y+y+++ edEL ++kG++++v e++ dgW++G+  +t k+G
    KIAA1494   198    SVYVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIG 244  

                   lfPsnYVeeie<-*
                    fP+nYV++++   
    KIAA1494   245 VFPGNYVAPVT    255  

SM00326: domain 2 of 2, from 582 to 638: score 63.6, E = 2.4e-14
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      e+ +++ +y +q+e EL +k+GDi+ v++k +dgW++G+l+r+Gk+G
    KIAA1494   582    ERHRVVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTG 628  

                   lfPsnYVeeie<-*
                   lfP+++V e     
    KIAA1494   629 LFPGSFV-ENI    638  

//