hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04272667/chunk_1/iprscan-20080502-04272667.nocrc
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Query sequence: KIAA1494
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00018.18.ls SH3 domain                                     123.4    5.8e-34   2
PF00018.18.fs SH3 domain                                     119.6    8.2e-33   2
PF07653.7.fs Variant SH3 domain                              69.6    2.1e-19   2
PF07653.7.ls Variant SH3 domain                              73.2    7.6e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00018.18.fs   1/2     198   254 ..     1    59 []    67.4  1.2e-17
PF00018.18.ls   1/2     198   254 ..     1    59 []    69.3  1.1e-17
PF07653.7.fs   1/2     199   254 ..     1    69 []    33.0  7.3e-09
PF07653.7.ls   1/2     199   254 ..     1    69 []    34.8  2.7e-07
PF00018.18.ls   2/2     582   638 .]     1    59 []    54.1  4.2e-13
PF07653.7.fs   2/2     583   638 .]     1    69 []    36.6  6.8e-10
PF07653.7.ls   2/2     583   638 .]     1    69 []    38.4  2.3e-08
PF00018.18.fs   2/2     590   638 .]     9    59 .]    52.3  1.6e-13

Alignments of top-scoring domains:
PF00018.18.fs: domain 1 of 2, from 198 to 254: score 67.4, E = 1.2e-17
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       ++vA+Y+Y++r +dEL ++kG+ + v e+  d gW kg +  t+ k
    KIAA1494   198    SVYVAIYPYTPRKEDELELRKGEMFLVFERCQD-GWFKGTSMHTS-K 242  

                   eGliPsNYVepv<-*
                    G +P NYV+pv   
    KIAA1494   243 IGVFPGNYVAPV    254  

PF00018.18.ls: domain 1 of 2, from 198 to 254: score 69.3, E = 1.1e-17
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       ++vA+Y+Y++r +dEL ++kG+ + v e+  d gW kg +  t+ k
    KIAA1494   198    SVYVAIYPYTPRKEDELELRKGEMFLVFERCQD-GWFKGTSMHTS-K 242  

                   eGliPsNYVepv<-*
                    G +P NYV+pv   
    KIAA1494   243 IGVFPGNYVAPV    254  

PF07653.7.fs: domain 1 of 2, from 199 to 254: score 33.0, E = 7.3e-09
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      +++ai  y++ ++++e      L l+kG+ + V+    ++ +dgw +
    KIAA1494   199    VYVAIYPYTP-RKEDE------LELRKGEMFLVF----ERCQDGWFK 234  

                   geslggGrrrRGlvPssaveel<-*
                   g+s    +   G++P ++v+++   
    KIAA1494   235 GTSMHTSKI--GVFPGNYVAPV    254  

PF07653.7.ls: domain 1 of 2, from 199 to 254: score 34.8, E = 2.7e-07
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      +++ai  y++ ++++e      L l+kG+ + V+    ++ +dgw +
    KIAA1494   199    VYVAIYPYTP-RKEDE------LELRKGEMFLVF----ERCQDGWFK 234  

                   geslggGrrrRGlvPssaveel<-*
                   g+s    +   G++P ++v+++   
    KIAA1494   235 GTSMHTSKI--GVFPGNYVAPV    254  

PF00018.18.ls: domain 2 of 2, from 582 to 638: score 54.1, E = 4.2e-13
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                      ++ ++   Y+++++ EL +k+GD+++v++k +d gW kg l+++g k
    KIAA1494   582    ERHRVVVSYPPQSEAELELKEGDIVFVHKKRED-GWFKGTLQRNG-K 626  

                   eGliPsNYVepv<-*
                   +Gl+P ++Ve +   
    KIAA1494   627 TGLFPGSFVENI    638  

PF07653.7.fs: domain 2 of 2, from 583 to 638: score 36.6, E = 6.8e-10
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      ++r++ +y + +++ e      L lk+Gd+v V     +k+ dgw +
    KIAA1494   583    RHRVVVSYPP-QSEAE------LELKEGDIVFVH----KKREDGWFK 618  

                   geslggGrrrRGlvPssaveel<-*
                   g++  +G++  Gl+P s+ve++   
    KIAA1494   619 GTLQRNGKT--GLFPGSFVENI    638  

PF07653.7.ls: domain 2 of 2, from 583 to 638: score 38.4, E = 2.3e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                      ++r++ +y + +++ e      L lk+Gd+v V     +k+ dgw +
    KIAA1494   583    RHRVVVSYPP-QSEAE------LELKEGDIVFVH----KKREDGWFK 618  

                   geslggGrrrRGlvPssaveel<-*
                   g++  +G++  Gl+P s+ve++   
    KIAA1494   619 GTLQRNGKT--GLFPGSFVENI    638  

PF00018.18.fs: domain 2 of 2, from 590 to 638: score 52.3, E = 1.6e-13
                   *->YearesdELsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNY
                      Y+++++ EL +k+GD+++v++k +d gW kg l+++g k+Gl+P ++
    KIAA1494   590    YPPQSEAELELKEGDIVFVHKKRED-GWFKGTLQRNG-KTGLFPGSF 634  

                   Vepv<-*
                   Ve +   
    KIAA1494   635 VENI    638  

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