hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04174074/chunk_1/iprscan-20080502-04174074.nocrc
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Query sequence: KIAA1489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                  47.1    2.3e-09   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00612      1/4     205   268 ..     1    55 []     5.0      5.8
SM00612      2/4     269   317 ..     1    55 []    29.7  0.00041
SM00612      3/4     318   357 ..     1    55 []     8.2      2.5
SM00612      4/4     358   420 ..     1    55 []     4.2      7.2

Alignments of top-scoring domains:
SM00612: domain 1 of 4, from 205 to 268: score 5.0, E = 5.8
                   *->kiYvvGGfdgttrclp..gegqrlksvE.......vYDpetnkWrpv
                       iY++GG+ + +++ +++++++ l +++++ +   ++D   n+W p 
    KIAA1489   205    DIYIAGGQVPLKNTKTnhSKTSKLQTAFrtvncfyWFDAQQNTWFPK 251  

                   psMptpRsgagvaving<-*
                   ++M   R   +++ ++g   
    KIAA1489   252 TPMLFVRIKPSLVCCEG    268  

SM00612: domain 2 of 4, from 269 to 317: score 29.7, E = 0.00041
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY++GG +       g+    ++vE+YD e ++W++v ++p++   
    KIAA1489   269    YIYAIGGDSV------GGELNRRTVERYDTEKDEWTMVSPLPCAWQW 309  

                   agvaving<-*
                   ++++v+++   
    KIAA1489   310 SAAVVVHD    317  

SM00612: domain 3 of 4, from 318 to 357: score 8.2, E = 2.5
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                      +iYv               ++l+   +Y p+++ W +++  +t Rs 
    KIAA1489   318    CIYV---------------MTLNLMYCYFPRSDSWVEMAMRQTSRSF 349  

                   agvaving<-*
                   a++a++++   
    KIAA1489   350 ASAAAFGD    357  

SM00612: domain 4 of 4, from 358 to 420: score 4.2, E = 7.2
                   *->kiYvvGGfdgttr.clp.gegqrlks...vEvYDpetnkWrpvpsMp
                      ki+ +GG + +t+++++ ++g++  s+ +vE+YD   n+W++ ++ p
    KIAA1489   358    KIFYIGGLHIATNsGIRlPSGTVDGSsvtVEIYDVNKNEWKMAANIP 404  

                   tpRsg...agvaving<-*
                    +R+ ++ + ++vi +   
    KIAA1489   405 AKRYSdpcVRAVVISN    420  

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