hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04160339/chunk_1/iprscan-20080502-04160339.nocrc
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Query sequence: KIAA1488
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 120.9    1.4e-31   1
SM00490                                                  69.0      6e-16   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1      49   240 ..     1   219 []   120.9  1.4e-31
SM00490      1/1     346   451 ..     1    86 []    69.0    6e-16

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 49 to 240: score 120.9, E = 1.4e-31
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + ++ Qke ++ + +++++++ ++TG+GKT++ ++++l+   ++
    KIAA1488    49    EKlPSYGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIER 95   

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                   +     kg ++r+++++P+r+ a+ +ae+++  +           +  ++
    KIAA1488    96 G-----KGSACRIVCTQPRRISAISVAERVA--A----------ERAESC 128  

                   ygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl.nld
                    +G+s     +q+r   + + +++ il++T+g++l+ l++++  +l+ ++
    KIAA1488   129 GSGnST---GYQIRLQSRLPRkqgSILYCTTGIILQWLqSDP--YLsSVS 173  

                   lvilDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppe
                   +++lDE+H++          ++d+l++++k l + +++++++l+SAT+ +
    KIAA1488   174 HIVLDEIHERN--------LQSDVLMtVVKDLlnfRSDLKVILMSATL-N 214  

                   ienllklflnlpelfpnpvfisvgftlepieqf<-*
                    e+++++f+n       p   ++gf  +p+ ++   
    KIAA1488   215 AEKFSEYFGN------CPMIHIPGF-TFPVVEY    240  

SM00490: domain 1 of 1, from 346 to 451: score 69.0, E = 6e-16
                   *->delaelLkellkd..pgikvarlHGglsqeeReeilekFrkgkikvL
                       +l +lL + ++ ++ ++ +++lH+ +++  +++++++ + g +k++
    KIAA1488   346    STLHDLLMSQVMFksDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIV 392  

                   vaTdvaerGlDipgvdlVInydl..................pwspasyiQ
                   +aT++ae++++i++v +VI+ +  ++++ +++++ ++ + ++ s+a++ Q
    KIAA1488   393 IATNIAETSITIDDVVYVIDGGKikethfdtqnnistmsaeWVSKANAKQ 442  

                   RiGRaGRaG<-*
                   R GRaGR     
    KIAA1488   443 RKGRAGRVQ    451  

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