hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04160339/chunk_1/iprscan-20080502-04160339.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1488 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04408.13.ls Helicase associated domain (HA2) 106.9 5.4e-29 1 PF04408.13.fs Helicase associated domain (HA2) 105.2 1.8e-28 1 PF07717.6.fs Domain of unknown function (DUF1605) 94.0 1.7e-26 1 PF07717.6.ls Domain of unknown function (DUF1605) 95.8 1.2e-25 1 PF00271.21.fs Helicase conserved C-terminal domain 59.5 9.1e-17 1 PF00271.21.ls Helicase conserved C-terminal domain 61.5 2.5e-15 1 PF00270.19.ls DEAD/DEAH box helicase 26.6 2.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00270.19.ls 1/1 54 218 .. 1 213 [] 26.6 2.9e-08 PF00271.21.fs 1/1 357 451 .. 1 76 [] 59.5 9.1e-17 PF00271.21.ls 1/1 357 451 .. 1 76 [] 61.5 2.5e-15 PF04408.13.ls 1/1 513 604 .. 1 124 [] 106.9 5.4e-29 PF04408.13.fs 1/1 513 604 .. 1 124 [] 105.2 1.8e-28 PF07717.6.fs 1/1 643 761 .. 1 139 [] 94.0 1.7e-26 PF07717.6.ls 1/1 643 761 .. 1 139 [] 95.8 1.2e-25 Alignments of top-scoring domains: PF00270.19.ls: domain 1 of 1, from 54 to 218: score 26.6, E = 2.9e-08 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx *->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq + Q+e +++i +++ +++++TG GKT il++ ++ KIAA1488 54 YGMQKELVNLIDNHQVTVISGETGCGKTTQVTQFILDNYIErG---- 96 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx eskplkkkkdgpqalvlaPTreLaeQiyeel.kklgkgiqpdleellglk k+++ ++++ P r a ++e++ ++++ KIAA1488 97 -------KGSACRIVCTQPRRISAISVAERVaAERAE------------S 127 RF xxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx vallyGGdsikeqleklDYrlkkglk.gkpdIlvgTPgrLldlllkgrkr +++ G s + q++ +l +++ Il++T g +l l ++ KIAA1488 128 CGS---GNSTGYQIRLQ-----SRLPrKQGSILYCTTGIILQWL----QS 165 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx x xxxxxxxx egasldlknlkllVlDEAhrlldmkGfgedleeilrrlp.r.pklrrlsq l++++ +VlDE+h+ + ++l +++ l +++++ KIAA1488 166 -DP--YLSSVSHIVLDEIHE-RNL--QSDVLMTVVKDLLnFrSD------ 203 RF xxxxxxxxxxxxxxxxxxxxx dlpnrqtllfSATlprnvedl<-* ++l+SATl n+e++ KIAA1488 204 ----LKVILMSATL--NAEKF 218 PF00271.21.fs: domain 1 of 1, from 357 to 451: score 59.5, E = 9.1e-17 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD +++ ++ +++lh+ +++ +++++++ g +k+++aT++a+++i+ KIAA1488 357 MFkSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSIT 403 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i dv +VI+ + ++++ +++++ ++ + ++ + ++ QR GRaGR+ KIAA1488 404 IDDVVYVIDGGKikethfdtqnnistmsaeWVSKANAKQRKGRAGRVQ 451 * KIAA1488 - - PF00271.21.ls: domain 1 of 1, from 357 to 451: score 61.5, E = 2.5e-15 *->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD +++ ++ +++lh+ +++ +++++++ g +k+++aT++a+++i+ KIAA1488 357 MFkSDKFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSIT 403 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- i dv +VI+ + ++++ +++++ ++ + ++ + ++ QR GRaGR+ KIAA1488 404 IDDVVYVIDGGKikethfdtqnnistmsaeWVSKANAKQRKGRAGRVQ 451 * KIAA1488 - - PF04408.13.ls: domain 1 of 1, from 513 to 604: score 106.9, E = 5.4e-29 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +++ L eL+Al D ++eLT plG +arlP++P++gkm+ l++alf KIAA1488 513 LSIRHLMELNAL-DKQEELT-PLGVHLARLPVEPHIGKMI-LFGALF 556 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla cld++l+iaa Ls ++pfv+ pl+k++ a+ + + KIAA1488 557 CCLDPVLTIAASLSF-KDPFVI----------PLGKEKIAD-----A--R 588 rakfegrsllksarsrlts.lsDhlall<-* r+++ + ++sDhl+++ KIAA1488 589 RKEL------------AKDtRSDHLTVV 604 PF04408.13.fs: domain 1 of 1, from 513 to 604: score 105.2, E = 1.8e-28 *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf +++ L eL+Al D ++eLT plG +arlP++P++gkm+ l++alf KIAA1488 513 LSIRHLMELNAL-DKQEELT-PLGVHLARLPVEPHIGKMI-LFGALF 556 gcldealiiaaiLsvrgepfvntGvDRdaqrlpldksekakrWNiSrdla cld++l+iaa Ls ++pfv+ pl+k++ a+ + + KIAA1488 557 CCLDPVLTIAASLSF-KDPFVI----------PLGKEKIAD-----A--R 588 rakfegrsllksarsrlts.lsDhlall<-* r+++ + ++sDhl+++ KIAA1488 589 RKEL------------AKDtRSDHLTVV 604 PF07717.6.fs: domain 1 of 1, from 643 to 761: score 94.0, E = 1.7e-26 *->sQLlrilkrlgli.........lnessgdiellrkallaGlypnvAr Q+ + l +g+++++++++++ n++s+++++++++++aGlyp+vA+ KIAA1488 643 GQFAEHLLGAGFVssrnpkdpeSNINSDNEKIIKAVICAGLYPKVAK 689 reedrggkgsYktlrsvrlpvrskrsgvkdgee.kgkfkt.ndgnVfiHP ++ + g+k +++ k++t++dg V +HP KIAA1488 690 IRLNLGKK------------------------RkMVKVYTkTDGLVAVHP 715 sSvLfntkkkppkwivytelvetskkgdgskvyardvtaispewllllap Sv+++++++ + w++y+ +++ts +y+ d+t++sp+ ll +++ KIAA1488 716 KSVNVEQTDFHYNWLIYHLKMRTSS------IYLYDCTEVSPYCLLFFGG 759 gki<-* +i KIAA1488 760 -DI 761 PF07717.6.ls: domain 1 of 1, from 643 to 761: score 95.8, E = 1.2e-25 *->sQLlrilkrlgli.........lnessgdiellrkallaGlypnvAr Q+ + l +g+++++++++++ n++s+++++++++++aGlyp+vA+ KIAA1488 643 GQFAEHLLGAGFVssrnpkdpeSNINSDNEKIIKAVICAGLYPKVAK 689 reedrggkgsYktlrsvrlpvrskrsgvkdgee.kgkfkt.ndgnVfiHP ++ + g+k +++ k++t++dg V +HP KIAA1488 690 IRLNLGKK------------------------RkMVKVYTkTDGLVAVHP 715 sSvLfntkkkppkwivytelvetskkgdgskvyardvtaispewllllap Sv+++++++ + w++y+ +++ts +y+ d+t++sp+ ll +++ KIAA1488 716 KSVNVEQTDFHYNWLIYHLKMRTSS------IYLYDCTEVSPYCLLFFGG 759 gki<-* +i KIAA1488 760 -DI 761 //