hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04110731/chunk_1/iprscan-20080502-04110731.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1485 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 401.4 5.1e-116 17 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/17 132 154 .. 1 23 [] 27.6 0.0018 SM00355 2/17 160 182 .. 1 23 [] 25.9 0.0056 SM00355 3/17 187 210 .. 1 23 [] 23.6 0.027 SM00355 4/17 215 238 .. 1 23 [] 21.8 0.098 SM00355 5/17 265 287 .. 1 23 [] 24.1 0.019 SM00355 6/17 293 315 .. 1 23 [] 21.1 0.15 SM00355 7/17 319 342 .. 1 23 [] 25.8 0.006 SM00355 8/17 603 625 .. 1 23 [] 21.0 0.16 SM00355 9/17 631 654 .. 1 23 [] 19.7 0.41 SM00355 10/17 659 683 .. 1 23 [] 29.0 0.00066 SM00355 11/17 691 714 .. 1 23 [] 22.9 0.044 SM00355 12/17 741 764 .. 1 23 [] 7.4 46 SM00355 13/17 770 792 .. 1 23 [] 28.7 0.0008 SM00355 14/17 798 820 .. 1 23 [] 25.0 0.01 SM00355 15/17 827 849 .. 1 23 [] 30.3 0.00027 SM00355 16/17 855 878 .. 1 23 [] 18.3 1.1 SM00355 17/17 902 925 .. 1 23 [] 29.1 0.00059 Alignments of top-scoring domains: SM00355: domain 1 of 17, from 132 to 154: score 27.6, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ C+k+f+ k++L+ H+r+H KIAA1485 132 FTCEY-CNKVFKFKhSLQAHLRIH 154 SM00355: domain 2 of 17, from 160 to 182: score 25.9, E = 0.0056 *->ykCpigCgksfssk.aLkrHmrvH<-* ykCp+ C++ k +L+ H+r+H KIAA1485 160 YKCPQ-CSYASAIKaNLNVHLRKH 182 SM00355: domain 3 of 17, from 187 to 210: score 23.6, E = 0.027 *->ykCpigCgksfssk.aLkrHmr.vH<-* + C++ C++++ sk++Lk H+ +vH KIAA1485 187 FACDY-CSFTCLSKgHLKVHIErVH 210 SM00355: domain 4 of 17, from 215 to 238: score 21.8, E = 0.098 *->ykCpigCgksfssk.aLkrHmr.vH<-* +C + C+k++s+ ++L++H+r+ H KIAA1485 215 QHCRF-CKKKYSDVkNLIKHIRdAH 238 SM00355: domain 5 of 17, from 265 to 287: score 24.1, E = 0.019 *->ykCpigCgksfssk.aLkrHmrvH<-* y C+i C ++f+++ + rHm vH KIAA1485 265 YDCHI-CERKFKNElDRDRHMLVH 287 SM00355: domain 6 of 17, from 293 to 315: score 21.1, E = 0.15 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cg + ++aL+ H+r+H KIAA1485 293 FACEL-CGHGATKYqALELHVRKH 315 SM00355: domain 7 of 17, from 319 to 342: score 25.8, E = 0.006 *->ykCpigCgksfssk.aLkrHmr.vH<-* y+C + C k+f s L+ H+++vH KIAA1485 319 YVCAV-CRKKFVSSiRLRTHIKeVH 342 SM00355: domain 8 of 17, from 603 to 625: score 21.0, E = 0.16 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgk f + ++ H+r+H KIAA1485 603 LECEY-CGKLFWYQvHFDMHVRTH 625 SM00355: domain 9 of 17, from 631 to 654: score 19.7, E = 0.41 *->ykCpigCgksfssk.aLkrHmr.vH<-* y C++ C++s +k+ LkrH+ ++H KIAA1485 631 YYCSQ-CHYSSITKnCLKRHVIqKH 654 SM00355: domain 10 of 17, from 659 to 683: score 29.0, E = 0.00066 *->ykCpi.gCgksfssk.aLkrHmrvH<-* +kCp +gC++s+++k L+ H++vH KIAA1485 659 LKCPTdGCDYSTPDKyKLQAHLKVH 683 SM00355: domain 11 of 17, from 691 to 714: score 22.9, E = 0.044 *->ykCpigCgksfssk.aLkrHmr.vH<-* y Cp+ C ksfs + k H+++ H KIAA1485 691 YSCPV-CEKSFSEDrLIKSHIKtNH 714 SM00355: domain 12 of 17, from 741 to 764: score 7.4, E = 46 *->ykCpigCg.ksfssk.aLkrHmrvH<-* kCp+ C+ + ++ ++L+rH+ H KIAA1485 741 MKCPY-CDfYFMKNGsDLQRHIWAH 764 SM00355: domain 13 of 17, from 770 to 792: score 28.7, E = 0.0008 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C + ++sk++Lk Hm +H KIAA1485 770 FKCSL-CEYATRSKsNLKAHMNRH 792 SM00355: domain 14 of 17, from 798 to 820: score 25.0, E = 0.01 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk+f+sk+ Lk H H KIAA1485 798 HLCDM-CGKKFKSKgTLKSHKLLH 820 SM00355: domain 15 of 17, from 827 to 849: score 30.3, E = 0.00027 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C+++ +k++L rHm +H KIAA1485 827 FKCTV-CDYTAAQKpQLLRHMEQH 849 SM00355: domain 16 of 17, from 855 to 878: score 18.3, E = 1.1 *->ykCpigCgksfssk.aLkrHmr.vH<-* ++C + C++s++ ++LkrH+ ++H KIAA1485 855 FRCAH-CHYSCNISgSLKRHYNrKH 878 SM00355: domain 17 of 17, from 902 to 925: score 29.1, E = 0.00059 *->ykCpigCgksfssk.aLkrHmr.vH<-* +kCp+ C++++ +k +++rH++++H KIAA1485 902 LKCPV-CSFVYGTKwEFNRHLKnKH 925 //