hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04110731/chunk_1/iprscan-20080502-04110731.nocrc
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Query sequence: KIAA1485
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         353.9   2.4e-103  17
PF00096.16.fs Zinc finger, C2H2 type                         320.4    2.8e-93  17
PF02892.5.fs BED zinc finger                                 29.3    5.9e-08   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/17    132   154 ..     1    24 []    29.4  4.6e-06
PF00096.16.ls   1/17    132   154 ..     1    24 []    31.3  3.1e-06
PF00096.16.ls   2/17    160   182 ..     1    24 []    23.8  0.00055
PF00096.16.ls   5/17    265   287 ..     1    24 []    18.8    0.018
PF00096.16.ls   7/17    319   342 ..     1    24 []    24.1  0.00047
PF00096.16.ls   8/17    603   625 ..     1    24 []    19.0    0.016
PF00096.16.ls  10/17    659   683 ..     1    24 []    23.7  0.00062
PF00096.16.ls  11/17    691   714 ..     1    24 []    25.2  0.00022
PF00096.16.fs  11/17    691   714 ..     1    24 []    23.2  0.00016
PF00096.16.fs  13/17    770   792 ..     1    24 []    27.2  1.5e-05
PF00096.16.ls  13/17    770   792 ..     1    24 []    29.2  1.3e-05
PF00096.16.ls  14/17    798   820 ..     1    24 []    24.4  0.00039
PF00096.16.ls  15/17    827   849 ..     1    24 []    23.8  0.00056
PF00096.16.ls  17/17    902   925 ..     1    24 []    19.9   0.0088

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 17, from 132 to 154: score 29.4, E = 4.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+k+F+ k++L++Hlr+H   
    KIAA1485   132    FTCE-YCNKVFKFKHSLQAHLRIH    154  

PF00096.16.ls: domain 1 of 17, from 132 to 154: score 31.3, E = 3.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+k+F+ k++L++Hlr+H   
    KIAA1485   132    FTCE-YCNKVFKFKHSLQAHLRIH    154  

PF00096.16.ls: domain 2 of 17, from 160 to 182: score 23.8, E = 0.00055
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykCp +C ++   k+nL+ Hlr+H   
    KIAA1485   160    YKCP-QCSYASAIKANLNVHLRKH    182  

PF00096.16.ls: domain 5 of 17, from 265 to 287: score 18.8, E = 0.018
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C ++F++  +  rH+ +H   
    KIAA1485   265    YDCH-ICERKFKNELDRDRHMLVH    287  

PF00096.16.ls: domain 7 of 17, from 319 to 342: score 24.1, E = 0.00047
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C  +C k+F ++  L++H++  H   
    KIAA1485   319    YVCA-VCRKKFVSSIRLRTHIKEvH    342  

PF00096.16.ls: domain 8 of 17, from 603 to 625: score 19.0, E = 0.016
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cgk F  + ++ +H rtH   
    KIAA1485   603    LECE-YCGKLFWYQVHFDMHVRTH    625  

PF00096.16.ls: domain 10 of 17, from 659 to 683: score 23.7, E = 0.00062
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                       kCp ++C++s  +k+ L++Hl++H   
    KIAA1485   659    LKCPTdGCDYSTPDKYKLQAHLKVH    683  

PF00096.16.ls: domain 11 of 17, from 691 to 714: score 25.2, E = 0.00022
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+Cp +C ksFs     k+H++t+H   
    KIAA1485   691    YSCP-VCEKSFSEDRLIKSHIKTnH    714  

PF00096.16.fs: domain 11 of 17, from 691 to 714: score 23.2, E = 0.00016
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+Cp +C ksFs     k+H++t+H   
    KIAA1485   691    YSCP-VCEKSFSEDRLIKSHIKTnH    714  

PF00096.16.fs: domain 13 of 17, from 770 to 792: score 27.2, E = 1.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+  C ++ ++ksnLk+H+++H   
    KIAA1485   770    FKCS-LCEYATRSKSNLKAHMNRH    792  

PF00096.16.ls: domain 13 of 17, from 770 to 792: score 29.2, E = 1.3e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+  C ++ ++ksnLk+H+++H   
    KIAA1485   770    FKCS-LCEYATRSKSNLKAHMNRH    792  

PF00096.16.ls: domain 14 of 17, from 798 to 820: score 24.4, E = 0.00039
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+  Cgk+F++k++Lk+H+  H   
    KIAA1485   798    HLCD-MCGKKFKSKGTLKSHKLLH    820  

PF00096.16.ls: domain 15 of 17, from 827 to 849: score 23.8, E = 0.00056
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+++  +k +L rH+  H   
    KIAA1485   827    FKCT-VCDYTAAQKPQLLRHMEQH    849  

PF00096.16.ls: domain 17 of 17, from 902 to 925: score 19.9, E = 0.0088
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kCp +C  ++ +k +++rHl+ +H   
    KIAA1485   902    LKCP-VCSFVYGTKWEFNRHLKNkH    925  

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