hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-04092543/chunk_1/iprscan-20080502-04092543.nocrc
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Query sequence: KIAA1484
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                 108.1      1e-27   6
SM00408                                                  57.5    1.7e-12   1
SM00409                                                  39.0    6.6e-07   1
SM00082                                                  27.5     0.0019   1
SM00060                                                  25.4     0.0079   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00369     1/6      17    40 ..     1    24 []    18.4        1
SM00369     2/6      41    64 ..     1    24 []    15.5      5.4
SM00369     3/6      65    88 ..     1    24 []    28.3   0.0011
SM00369     4/6      90   113 ..     1    24 []     9.4       29
SM00369     5/6     114   137 ..     1    24 []    20.3     0.28
SM00369     6/6     138   162 ..     1    24 []    16.2      4.4
SM00082     1/1     181   226 ..     1    55 []    27.5   0.0019
SM00409     1/1     235   317 ..     1    58 []    39.0  6.6e-07
SM00408     1/1     241   306 ..     1    56 []    57.5  1.7e-12
SM00060     1/1     351   431 ..     1    69 []    25.4   0.0079

Alignments of top-scoring domains:
SM00369: domain 1 of 6, from 17 to 40: score 18.4, E = 1
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      +++L +L Ls+N + ++ +gaF++   
    KIAA1484    17    MTSLVHLTLSRNTIGQVAAGAFAD    40   

SM00369: domain 2 of 6, from 41 to 64: score 15.5, E = 5.4
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++Lr L+L++N+L ++  + ++g   
    KIAA1484    41    LRALRALHLDSNRLAEVRGDQLRG    64   

SM00369: domain 3 of 6, from 65 to 88: score 28.3, E = 0.0011
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nLr+L L+nNq++++ + aF+    
    KIAA1484    65    LGNLRHLILGNNQIRRVESAAFDA    88   

SM00369: domain 4 of 6, from 90 to 113: score 9.4, E = 29
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+  + LdLs+N+L++LP +a +    
    KIAA1484    90    LSTVEDLDLSYNNLEALPWEAVGQ    113  

SM00369: domain 5 of 6, from 114 to 137: score 20.3, E = 0.28
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      ++nL +L L++N + ++ +g+F     
    KIAA1484   114    MVNLNTLTLDHNLIDHIAEGTFVQ    137  

SM00369: domain 6 of 6, from 138 to 162: score 16.2, E = 4.4
                   *->LpnLreLdLsnNqLtsLP.pgaFqg<-*
                      L++L +Ld  +N+L  LP++g+F     
    KIAA1484   138    LHKLVRLDMTSNRLHKLPpDGLFLR    162  

SM00082: domain 1 of 1, from 181 to 226: score 27.5, E = 0.0019
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP++C+CeL+wL+r+ ++       d     +Ca+Pe+l + + + +
    KIAA1484   181    NPLHCNCELLWLRRLTRE-------DD--LETCATPEHLTD-RYFWS 217  

                   lp.sefsCp<-*
                    p+ ef C+   
    KIAA1484   218 IPeEEFLCE    226  

SM00409: domain 1 of 1, from 235 to 317: score 39.0, E = 6.6e-07
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       ++ +v+eG+ v+L+C+a +++ + ++W  ++++  +++++++ +++
    KIAA1484   235    GGrALVVEGQAVSLRCrAVgdpepVVHWVapdgrllgnssrtrvrgd 281  

                   ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++L ++  t+ Ds   Gt+tC a++ +g+a++  ++++ V    
    KIAA1484   282 gtLDVtITTLRDS---GTFTCIASnaAGEATA--PVEVCVV    317  

SM00408: domain 1 of 1, from 241 to 306: score 57.5, E = 1.7e-12
                   *->leGqsVtLtCpasgdpvpnItWlk..gkplp........sgstLtik
                       eGq+V+L+C+a gdp+p ++W+ ++g  l ++++++ ++++tL ++
    KIAA1484   241    VEGQAVSLRCRAVGDPEPVVHWVApdGRLLGnssrtrvrGDGTLDVT 287  

                   nvsleDsGlYtCvArNsvg<-*
                     +l DsG+ tC+A+N++g   
    KIAA1484   288 ITTLRDSGTFTCIASNAAG    306  

SM00060: domain 1 of 1, from 351 to 431: score 25.4, E = 0.0079
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP.....ivgYr....
                        + ++   l++ + ts+      sv ++W +  + ++i  Y+++ +
    KIAA1484   351    SAAERR---LVAAELTSN------SVLIRWPAQrpvpgIRMYQvqyn 388  

                   ..................ytltgLkPgaepwteYefrVrAvngndaGeg<
                   ++++++ + +  +++++++ + +L +g      Y   V Av++  +G   
    KIAA1484   389 ssvddslvyrmipstsqtFLVNDLAAG----RAYDLCVLAVYD--DGAT  431  

                   -*
                     
    KIAA1484     -    -    

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