hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04074981/chunk_1/iprscan-20080502-04074981.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1483 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 62.2 6.8e-14 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/3 168 190 .. 1 23 [] 29.2 0.00058 SM00355 2/3 277 299 .. 1 23 [] 29.4 0.00051 SM00355 3/3 304 324 .. 1 23 [] 3.6 1.2e+02 Alignments of top-scoring domains: SM00355: domain 1 of 3, from 168 to 190: score 29.2, E = 0.00058 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cg++f+ +++L++H+++H KIAA1483 168 YACHL-CGRRFTLRsSLREHLQIH 190 SM00355: domain 2 of 3, from 277 to 299: score 29.4, E = 0.00051 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+i Cg++f +k++ ++Hm++H KIAA1483 277 YECTI-CGRKFIQKsHWREHMYIH 299 SM00355: domain 3 of 3, from 304 to 324: score 3.6, E = 1.2e+02 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ C+ksf+++++ rH+ KIAA1483 304 FKCST-CDKSFCRAnQAARHVC-- 324 //