hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03575704/chunk_1/iprscan-20080502-03575704.nocrc
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Query sequence: KIAA1477
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 289.3    2.9e-82   1
SM00219                                                  20.5    2.1e-12   1
SM00165                                                  43.5    2.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     172   400 ..     1   280 []    20.5  2.1e-12
SM00220    1/1     172   401 ..     1   231 []   289.3  2.9e-82
SM00165    1/1     422   459 ..     1    38 []    43.5  2.8e-08

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 172 to 400: score 20.5, E = 2.1e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.....keeFlr
                       +l k++G G+F +V +++   +++eVAVK + +   ++++++ + r
    KIAA1477   172    YRLQKTIGKGNFAKVKLARHVltgREVAVKIIDKTQlnptsLQKLFR 218  

                   EakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldy
                   E +iMk l  +HpNi                             G   dy
    KIAA1477   219 EVRIMKIL--NHPNI-----------------------------GEVFDY 237  

                   LrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvv
                   L ++++  + ++      QI +  +Y ++k +vHRDL A N L++ +  +
    KIAA1477   238 LVAHGR-MKEKEARAKFRQIVSAVQYCHQKYIVHRDLKAENLLLDGDMNI 286  

                   KIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgk
                   KI+DFG s + + +       +  +     +g    P+   APE ++ +k
    KIAA1477   287 KIADFGFSNEFTVG------NKLDTF----CGS--PPYA--APELFQGKK 322  

                   Ft.skSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                   + +++ DVWS GV L+ + + G  P  g      + +e++e++ +G   +
    KIAA1477   323 YDgPEVDVWSLGVILYTLVS-GSLPFDG-----QNLKELRERVLRG-KYR 365  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-*
                   +P +        ++++  +l ++    +P +R + +++ ++r+   
    KIAA1477   366 IPFY--------MSTDCENLLKKLLVLNPIKRGSLEQImKDRW    400  

SM00220: domain 1 of 1, from 172 to 401: score 289.3, E = 2.9e-82
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik.........erilr
                      Y+l k++GkG F+kV+lar++ tgr+vA+K+i++++ ++++ +++ r
    KIAA1477   172    YRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDktqlnptslQKLFR 218  

                   EikiLkk.dHPNIVkLydvfeddklylVmEyceGdlGdLfdllkkrgrrg
                   E++i+k  +HPNI                       G++fd+l+ +gr  
    KIAA1477   219 EVRIMKIlNHPNI-----------------------GEVFDYLVAHGR-- 243  

                   lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKla
                       + E+ear  frQi+sa++Y+H++ I+HRDLK eN+LLd + ++K+a
    KIAA1477   244 ----MKEkEARAKFRQIVSAVQYCHQKYIVHRDLKAENLLLDGdmNIKIA 289  

                   DFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   DFG++ +++ +++ +tf+G+p Y APE++++++Y++p+vD+WSlG+ily 
    KIAA1477   290 DFGFSNEFtvgnklDTFCGSPPYAAPELFqgkKYDGPEVDVWSLGVILYT 339  

                   lltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPekR
                   l++G  PF++++l+++ +++++++++ + + S ++ +L+kklLv +P kR
    KIAA1477   340 LVSGSLPFDgqNLKELRERVLrgkyripfymSTDCENLLKKLLVLNPIKR 389  

                   lta.eaLedeldikaHPff<-*
                    + +++++       + ++   
    KIAA1477   390 GSLeQIMK-------DRWM    401  

SM00165: domain 1 of 1, from 422 to 459: score 43.5, E = 2.8e-08
                   *->deekieqLleMGFsreeavdALratngNverAaeyLls<-*
                      d ++i+ ++ MGF r+e+ dAL ++++++ +A+++Ll    
    KIAA1477   422    DTKRIDIMVTMGFARDEINDALINQKYDEVMATYILLG    459  

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