hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03560801/chunk_1/iprscan-20080502-03560801.nocrc
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Query sequence: KIAA1476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00297                                                 145.3    6.5e-39   1
SM00571                                                  83.6    2.4e-20   1
SM00249                                                  56.7    2.9e-12   1
SM00391                                                  54.9      1e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00391     1/1     750   820 ..     1    87 []    54.9    1e-11
SM00571     1/1    1061  1126 ..     1    65 []    83.6  2.4e-20
SM00249     1/1    1907  1953 ..     1    39 []    56.7  2.9e-12
SM00297     1/1    2032  2140 ..     1   118 []   145.3  6.5e-39

Alignments of top-scoring domains:
SM00391: domain 1 of 1, from 750 to 820: score 54.9, E = 1e-11
                   *->edelrlPaLppGWrRetvqRksgKKssagkgDVyYisPcGkkLRsks
                      e elr P L +GW Ret++R +g   ++ +g+V+Y++PcGkkLR+++
    KIAA1476   750    ERELRIP-LEYGWQRETRIRNFG---GRLQGEVAYYAPCGKKLRQYP 792  

                   ElarYLhkngdlslaledPLRPEYlFdFnarvpvgpkitp<-*
                   E+++   + + ++l+ e         d  +r++ ++ ++    
    KIAA1476   793 EVIK---GMQWCLLKEE---------DVIPRIRAMEGRRG    820  

SM00571: domain 1 of 1, from 1061 to 1126: score 83.6, E = 2.4e-20
                   *->neefgdlLmvyEFLrsFgkvLgLspfra.vtledfieALkcrrdqyg
                        +f+d+Lmv++FLr+FgkvLg+++ ++ ++l++++e+L + +d++g
    KIAA1476  1061    GSTFSDCLMVVQFLRNFGKVLGFDVNIDvPNLSVLQEGLLNIGDSMG 1107 

                   llaevlvvLLrailkdege<-*
                   +++++lv+LL+a+++d+g    
    KIAA1476  1108 EVQDLLVRLLSAAVCDPGL    1126 

SM00249: domain 1 of 1, from 1907 to 1953: score 56.7, E = 2.9e-12
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      yC++C+k+++++ ll+Cd gCd+  H+ C++p+ +++pdg+w+Cp C
    KIAA1476  1907    YCqICRKgdneElLLLCD-GCDKGCHTyCHRPKITtIPDGdWFCPAC 1952 

                   k<-*
                       
    KIAA1476  1953 I    1953 

SM00297: domain 1 of 1, from 2032 to 2140: score 145.3, E = 6.5e-39
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      ++++  k  +l+  +l +++ h        ++awpFl pv+ k+  v
    KIAA1476  2032    PKRdDSKDLALCSMILTEMETH--------EDAWPFLLPVNLKL--V 2068 

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   P+Y ++IkkPMD++tI++kl +g+Y +le F+ D++L+f+N+ t+Ne ds
    KIAA1476  2069 PGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDS 2118 

                   evykdAkkLeklfeeklkelpp<-*
                   ++ ++++ ++k+fe+k+++ ++   
    KIAA1476  2119 DIGRAGHNMRKYFEKKWTDTFK    2140 

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