hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03560801/chunk_1/iprscan-20080502-03560801.nocrc
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Query sequence: KIAA1476
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.ls Bromodomain                                 120.6    4.2e-33   1
PF00439.15.fs Bromodomain                                 118.6    6.8e-33   1
PF00628.19.fs PHD-finger                                   66.6    5.8e-21   1
PF01429.10.fs Methyl-CpG binding domain                    74.5    2.2e-20   1
PF02791.7.fs DDT domain                                   71.1    8.8e-20   1
PF02791.7.ls DDT domain                                   73.1    8.2e-19   1
PF00628.19.ls PHD-finger                                   68.5      2e-17   1
PF01429.10.ls Methyl-CpG binding domain                    56.9    6.2e-14   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF01429.10.ls   1/1     747   811 ..     1   129 []    56.9  6.2e-14
PF01429.10.fs   1/1     747   796 ..     1    68 [.    74.5  2.2e-20
PF02791.7.fs   1/1    1062  1123 ..     1    62 []    71.1  8.8e-20
PF02791.7.ls   1/1    1062  1123 ..     1    62 []    73.1  8.2e-19
PF00628.19.ls   1/1    1907  1955 ..     1    51 []    68.5    2e-17
PF00628.19.fs   1/1    1907  1955 ..     1    51 []    66.6  5.8e-21
PF00439.15.fs   1/1    2038  2126 ..     1    92 []   118.6  6.8e-33
PF00439.15.ls   1/1    2038  2126 ..     1    92 []   120.6  4.2e-33

Alignments of top-scoring domains:
PF01429.10.ls: domain 1 of 1, from 747 to 811: score 56.9, E = 6.2e-14
                   *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk
                      ++++re+r+pL++GW+Retr+R++G +                   +
    KIAA1476   747    VTDERELRIPLEYGWQRETRIRNFGGR------------------LQ 775  

                   fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs
                   ++V+Yy+P+Gkklr+++ev++     g                       
    KIAA1476   776 GEVAYYAPCGKKLRQYPEVIK-----G----------------------- 797  

                   rarrngksnkKvsvtslkledFdFttrkevgr<-*
                                     +  +++    +++r   
    KIAA1476   798 ------------------MQWCLLKEEDVIPR    811  

PF01429.10.fs: domain 1 of 1, from 747 to 796: score 74.5, E = 2.2e-20
                   *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk
                      ++++re+r+pL++GW+Retr+R++G +                   +
    KIAA1476   747    VTDERELRIPLEYGWQRETRIRNFGGR------------------LQ 775  

                   fDVyYysPtGkklrsksevar<-*
                   ++V+Yy+P+Gkklr+++ev++   
    KIAA1476   776 GEVAYYAPCGKKLRQYPEVIK    796  

PF02791.7.fs: domain 1 of 1, from 1062 to 1123: score 71.1, E = 8.8e-20
                   *->esfgdlLmiyeFLnsFGevLdLsPftlddfiaaLleelleqsdllGE
                       +f+d+Lm+++FL++FG+vL+++   +++ + +L+e+ll+ +d++GE
    KIAA1476  1062    STFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGE 1108 

                   vhvlLlRlllakeqd<-*
                   v++lL+Rll a++ d   
    KIAA1476  1109 VQDLLVRLLSAAVCD    1123 

PF02791.7.ls: domain 1 of 1, from 1062 to 1123: score 73.1, E = 8.2e-19
                   *->esfgdlLmiyeFLnsFGevLdLsPftlddfiaaLleelleqsdllGE
                       +f+d+Lm+++FL++FG+vL+++   +++ + +L+e+ll+ +d++GE
    KIAA1476  1062    STFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGE 1108 

                   vhvlLlRlllakeqd<-*
                   v++lL+Rll a++ d   
    KIAA1476  1109 VQDLLVRLLSAAVCD    1123 

PF00628.19.ls: domain 1 of 1, from 1907 to 1955: score 68.5, E = 2e-17
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      yC++C+k   d++++ll+CDgCd+ +H++C+ p+++   ip+++W+C
    KIAA1476  1907    YCQICRK--GDNEELLLLCDGCDKGCHTYCHRPKIT--TIPDgdWFC 1949 

                   peCkpk<-*
                   p C++k   
    KIAA1476  1950 PACIAK    1955 

PF00628.19.fs: domain 1 of 1, from 1907 to 1955: score 66.6, E = 5.8e-21
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC
                      yC++C+k   d++++ll+CDgCd+ +H++C+ p+++   ip+++W+C
    KIAA1476  1907    YCQICRK--GDNEELLLLCDGCDKGCHTYCHRPKIT--TIPDgdWFC 1949 

                   peCkpk<-*
                   p C++k   
    KIAA1476  1950 PACIAK    1955 

PF00439.15.fs: domain 1 of 1, from 2038 to 2126: score 118.6, E = 6.8e-33
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                       + +l ++++  +e +++a+pfl pV+ +   +P+Y ++IkkPMD++
    KIAA1476  2038    KDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFS 2082 

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TI++kl +g+Y  +le F  D++L+f+N+ t+Ne+ds++ ++++    
    KIAA1476  2083 TIREKLSSGQY-PNLETFALDVRLVFDNCETFNEDDSDIGRAGHN    2126 

PF00439.15.ls: domain 1 of 1, from 2038 to 2126: score 120.6, E = 4.2e-33
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                       + +l ++++  +e +++a+pfl pV+ +   +P+Y ++IkkPMD++
    KIAA1476  2038    KDLALCSMILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFS 2082 

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   TI++kl +g+Y  +le F  D++L+f+N+ t+Ne+ds++ ++++    
    KIAA1476  2083 TIREKLSSGQY-PNLETFALDVRLVFDNCETFNEDDSDIGRAGHN    2126 

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