hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03543157/chunk_1/iprscan-20080502-03543157.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1475 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05131.5.ls Pep3/Vps18/deep orange family 263.9 3e-76 1 PF05131.5.fs Pep3/Vps18/deep orange family 262.1 1e-75 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05131.5.fs 1/1 304 449 .. 1 172 [] 262.1 1e-75 PF05131.5.ls 1/1 304 449 .. 1 172 [] 263.9 3e-76 Alignments of top-scoring domains: PF05131.5.fs: domain 1 of 1, from 304 to 449: score 262.1, E = 1e-75 *->GIvfGdlsEKqiyvnpasnlleeelslskvlfeieeklsdgkdrdep G+++G+l +++++++ll+ee++ +e++e++++g ++p KIAA1475 304 GVLYGAL-----DCGRPDSLLSEERV-----WEYPEGVGPG---ASP 337 pkaivLTefHlLLLyanrVkaVnrLNNDVVFgeqvyeeqfdessdpvgea p+aivLT+fH+LLL+a+rV+aV++L+ g++v++++f+e ++g + KIAA1475 338 PLAIVLTQFHFLLLLADRVEAVCTLT-----GQVVLRDHFLE---KFG-P 378 LgGlvsDavkntyWlYTqnsiFelvVedEaRdVWkvYLdkgkyekALeya L+++v+D++++++W+YT++++F+++V++EaRdVW++YLd++++++A+ey+ KIAA1475 379 LKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYC 428 reddeiepsqrdlVllksAdflfqd<-* re +p+++d+Vl+++Adf+f++ KIAA1475 429 RE----RPDCLDTVLAREADFCFRQ 449 PF05131.5.ls: domain 1 of 1, from 304 to 449: score 263.9, E = 3e-76 *->GIvfGdlsEKqiyvnpasnlleeelslskvlfeieeklsdgkdrdep G+++G+l +++++++ll+ee++ +e++e++++g ++p KIAA1475 304 GVLYGAL-----DCGRPDSLLSEERV-----WEYPEGVGPG---ASP 337 pkaivLTefHlLLLyanrVkaVnrLNNDVVFgeqvyeeqfdessdpvgea p+aivLT+fH+LLL+a+rV+aV++L+ g++v++++f+e ++g + KIAA1475 338 PLAIVLTQFHFLLLLADRVEAVCTLT-----GQVVLRDHFLE---KFG-P 378 LgGlvsDavkntyWlYTqnsiFelvVedEaRdVWkvYLdkgkyekALeya L+++v+D++++++W+YT++++F+++V++EaRdVW++YLd++++++A+ey+ KIAA1475 379 LKHMVKDSSTGQLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYC 428 reddeiepsqrdlVllksAdflfqd<-* re +p+++d+Vl+++Adf+f++ KIAA1475 429 RE----RPDCLDTVLAREADFCFRQ 449 //