hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03524998/chunk_1/iprscan-20080502-03524998.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1474
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  95.6    5.9e-24   5
SM00389                                                  28.4    0.00036   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/5     212   236 ..     1    23 []    17.3      2.1
SM00355      2/5     273   297 ..     1    23 []    22.9    0.046
SM00355      3/5     384   408 ..     1    23 []    14.9      6.5
SM00389      1/1     888   962 ..     1    63 []    28.4  0.00036
SM00355      4/5     974   996 ..     1    23 []    13.5      9.4
SM00355      5/5    1039  1062 ..     1    23 []    26.9   0.0028

Alignments of top-scoring domains:
SM00355: domain 1 of 5, from 212 to 236: score 17.3, E = 2.1
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      ++C+  C+  + +  +L+ Hm ++ H   
    KIAA1474   212    FRCKD-CSAAYDTLvELTVHMNetGH    236  

SM00355: domain 2 of 5, from 273 to 297: score 22.9, E = 0.046
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg sf s ++L  Hm +++H   
    KIAA1474   273    LKCMY-CGHSFESLqDLSVHMIktKH    297  

SM00355: domain 3 of 5, from 384 to 408: score 14.9, E = 6.5
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      +kC + Cg s  + ++L+ Hm+ + H   
    KIAA1474   384    LKCME-CGSSHDTLqELTAHMMvtGH    408  

SM00389: domain 1 of 1, from 888 to 962: score 28.4, E = 0.00036
                   *->krrkRts.ftpeQleeLEkeFeknp...........YPsreereeLA
                      kr+ R+s+++p+ l +L++ F+ + +++++++   + +s++er +++
    KIAA1474   888    KRKGRQSnWNPQHLLILQAQFAASLrqtsegkyimsDLSPQERMHIS 934  

                   keLgLterqVkvWFQNRRakwkrqekkk<-*
                   + +gL+ + +  W  N  + ++r    k   
    KIAA1474   935 RFTGLSMTTISHWLANVKYQLRRTGGTK    962  

SM00355: domain 4 of 5, from 974 to 996: score 13.5, E = 9.4
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C  + ++++ ++ H+ +H   
    KIAA1474   974    FFCND-CASQIRTPsTYISHLESH    996  

SM00355: domain 5 of 5, from 1039 to 1062: score 26.9, E = 0.0028
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C+++f sk+a k H+ ++H   
    KIAA1474  1039    YQCKL-CNRTFASKhAVKLHLSkTH    1062 

//