hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03524998/chunk_1/iprscan-20080502-03524998.nocrc
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Query sequence: KIAA1474
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          88.6    1.8e-23   5
PF00096.16.fs Zinc finger, C2H2 type                          78.7    1.6e-20   5
PF00046.19.ls Homeobox domain                                 -0.5     0.0052   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   1/5     212   236 ..     1    24 []    20.4   0.0059
PF00096.16.ls   2/5     273   297 ..     1    24 []    19.2    0.014
PF00046.19.ls   1/1     890   957 ..     1    57 []    -0.5   0.0052
PF00096.16.ls   5/5    1039  1062 ..     1    24 []    23.5   0.0007

Alignments of top-scoring domains:
PF00096.16.ls: domain 1 of 5, from 212 to 236: score 20.4, E = 0.0059
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      ++C+ dC  ++ +  +L+ H++ ++H   
    KIAA1474   212    FRCK-DCSAAYDTLVELTVHMNEtgH    236  

PF00096.16.ls: domain 2 of 5, from 273 to 297: score 19.2, E = 0.014
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                       kC  +Cg sF +  +L  H+ +++H   
    KIAA1474   273    LKCM-YCGHSFESLQDLSVHMIKtkH    297  

PF00046.19.ls: domain 1 of 1, from 890 to 957: score -0.5, E = 0.0052
                   *->rrkRTtftpeQleeLEkeFq...........knrYPsreeReeLAkk
                      + +  +  p+ l++L++ F+ + +++++++   + +s++eR ++++ 
    KIAA1474   890    KGRQSNWNPQHLLILQAQFAaslrqtsegkyIMSDLSPQERMHISRF 936  

                   LgLterqVkvWFQNRRaKwKk<-*
                   +gL+ + +  W  N ++  ++   
    KIAA1474   937 TGLSMTTISHWLANVKYQLRR    957  

PF00096.16.ls: domain 5 of 5, from 1039 to 1062: score 23.5, E = 0.0007
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+  C+++F +k+  k Hl ++H   
    KIAA1474  1039    YQCK-LCNRTFASKHAVKLHLSKtH    1062 

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