hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03510205/chunk_1/iprscan-20080502-03510205.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1473 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 352.5 2.7e-101 13 SM00349 141.3 1e-37 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 15 75 .. 1 62 [] 141.3 1e-37 SM00355 1/13 184 206 .. 1 23 [] 22.2 0.071 SM00355 2/13 212 234 .. 1 23 [] 25.6 0.0069 SM00355 3/13 240 262 .. 1 23 [] 28.3 0.001 SM00355 4/13 268 290 .. 1 23 [] 30.6 0.00022 SM00355 5/13 296 318 .. 1 23 [] 26.7 0.0032 SM00355 6/13 324 346 .. 1 23 [] 28.0 0.0013 SM00355 7/13 352 374 .. 1 23 [] 30.0 0.00032 SM00355 8/13 380 402 .. 1 23 [] 30.2 0.00029 SM00355 9/13 408 430 .. 1 23 [] 27.3 0.0021 SM00355 10/13 436 458 .. 1 23 [] 26.5 0.0036 SM00355 11/13 464 486 .. 1 23 [] 27.8 0.0015 SM00355 12/13 492 514 .. 1 23 [] 20.2 0.28 SM00355 13/13 520 542 .. 1 23 [] 29.0 0.00064 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 15 to 75: score 141.3, E = 1e-37 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVA++Fs EEW++LD+aQ+nLYR+VMlENY+nLv++G + sk KIAA1473 15 LTFRDVAIEFSLEEWQCLDTAQQNLYRNVMLENYRNLVFVG-IAASK 60 pdliskLEqgeEpwi<-* pdli++LEqg+Epw+ KIAA1473 61 PDLITCLEQGKEPWN 75 SM00355: domain 1 of 13, from 184 to 206: score 22.2, E = 0.071 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ C ksf+ ++L +H r+H KIAA1473 184 FKCKE-CEKSFCMLsHLAQHKRIH 206 SM00355: domain 2 of 13, from 212 to 234: score 25.6, E = 0.0069 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk ++ ++L H r+H KIAA1473 212 YKCKE-CGKAYNETsNLSTHKRIH 234 SM00355: domain 3 of 13, from 240 to 262: score 28.3, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L+ H +H KIAA1473 240 YKCEE-CGKAFNRLsHLTTHKIIH 262 SM00355: domain 4 of 13, from 268 to 290: score 30.6, E = 0.00022 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ +L+ H r+H KIAA1473 268 YKCEE-CGKAFNQSaNLTTHKRIH 290 SM00355: domain 5 of 13, from 296 to 318: score 26.7, E = 0.0032 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+ fs+ + L+ H +H KIAA1473 296 YKCEE-CGRAFSQSsTLTAHKIIH 318 SM00355: domain 6 of 13, from 324 to 346: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ + L+ H +H KIAA1473 324 YKCEE-CGKAFSQSsTLTTHKIIH 346 SM00355: domain 7 of 13, from 352 to 374: score 30.0, E = 0.00032 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L+ H r+H KIAA1473 352 YKCEE-CGKAFSQLsHLTTHKRIH 374 SM00355: domain 8 of 13, from 380 to 402: score 30.2, E = 0.00029 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L+ H r+H KIAA1473 380 YKCEE-CGKAFKQSsTLTTHKRIH 402 SM00355: domain 9 of 13, from 408 to 430: score 27.3, E = 0.0021 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k fs+ ++L+ H r+H KIAA1473 408 YKCEV-CSKAFSRFsHLTTHKRIH 430 SM00355: domain 10 of 13, from 436 to 458: score 26.5, E = 0.0036 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ ++L+ H +H KIAA1473 436 YKCEE-CGKAFNLSsQLTTHKIIH 458 SM00355: domain 11 of 13, from 464 to 486: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L +H +H KIAA1473 464 YKCEE-CGKAFNQSsTLSKHKVIH 486 SM00355: domain 12 of 13, from 492 to 514: score 20.2, E = 0.28 *->ykCpigCgksfssk.aLkrHmrvH<-* yk ++ Cgk f++ ++L+ H ++H KIAA1473 492 YKYEE-CGKAFNQSsHLTTHKMIH 514 SM00355: domain 13 of 13, from 520 to 542: score 29.0, E = 0.00064 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ + L+rH ++H KIAA1473 520 YKCEE-CGKAFNNSsILNRHKMIH 542 //