# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj03211.fasta.huge -Q ../query/KIAA1472.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1472, 601 aa
 vs ./tmplib.24314 library

1986904 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.1229+/-0.00813; mu= -10.9952+/- 0.551
 mean_var=266.5096+/-64.212, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.078563

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0374  ( 584 res)   hh00327                     ( 584)  870 111.8 1.6e-25


>>KIAA0374  ( 584 res)   hh00327                          (584 aa)
 initn: 1181 init1: 808 opt: 870  Z-score: 550.2  bits: 111.8 E(): 1.6e-25
Smith-Waterman score: 1171;  41.835% identity (64.771% similar) in 545 aa overlap (96-598:50-568)

          70        80        90       100       110       120     
KIAA14 SSRYKKESKSGLVKPGSEADFSSSSSTGSISAPEVHMSTAGSKRSSSSRNRGPHGRSNGA
                                     :.:  .:.  :   :.     ::  :    
KIAA03 FNSLVEAAVVCQALAPGVSCRRVRREAMPGSGPSERMTWPGPALSA-----GPPTRP---
      20        30        40        50        60             70    

         130         140                 150        160        170 
KIAA14 SSHKPGSSPSSP--REKDLLSML----------CRNQLSP-VNIHPSYAPSS-PSSSNSG
        :  ::  :  :  : ..:..:            : . :: :... .:. ::  ::::::
KIAA03 LSSAPGIPPIPPLTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSLSSSSNSG
              80        90       100       110       120       130 

             180       190       200       210       220       230 
KIAA14 SYKGSDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLH
       :::::: ::  ::: .:  :..:::..::.::::::::::::: .::::..::... ::.
KIAA03 SYKGSDSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQ
             140       150       160       170       180       190 

             240       250       260       270       280       290 
KIAA14 ERESEIVELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLADKDK
       .:..:: .::.::.::.:::::::::::::::::::::::::::::::.:....: ::::
KIAA03 DRDTEIDDLKTQLSRMQEDWIEEECHRVEAQLALKEARKEIKQLKQVIDTVKNNLIDKDK
             200       210       220       230       240       250 

             300       310       320       330       340       350 
KIAA14 GIQKYFVDINIQNKKLESLLQSMEMAHSGSLRDELCLDFPCDSPEKSLTLNPPLDTMADG
       :.:::::::::::::::.::.:::.:..:  ...   .    :: .::: .     ..: 
KIAA03 GLQKYFVDINIQNKKLETLLHSMEVAQNGMAKEDGTGESAGGSPARSLTRSSTYTKLSDP
             260       270       280       290       300       310 

             360               370       380        390        400 
KIAA14 LSLEEQVTGE--------GADRELLVGDSIANSTDLFDEI-VTATTTESGDLEL-VHST-
           ..  :.        :::  . ..:.  . :: ..   . .. .. :  :  .::. 
KIAA03 AVCGDRQPGDPSSGSAEDGADSGFAAADDTLSRTDALEASSLLSSGVDCGTEETSLHSSF
             320       330       340       350       360       370 

                    410          420       430       440       450 
KIAA14 ------PGANVLELLPIVMGQEEG---SVVVERAVQTDVVPYSPAISELIQSVLQKLQDP
             :..:. : :  . :.: :   : . :::.::: : :.: .. ....: :   . 
KIAA03 GLGPRFPASNTYEKL--LCGMEAGVQASCMQERAIQTDFVQYQPDLDTILEKVTQA--QV
             380         390       400       410       420         

             460       470       480       490              500    
KIAA14 CPSSLASPDESEPDSMESFPESLSALVVDLTPRNPNSAILLS---PVETP----YANVDA
       : .        .:.: .  :: :.:      ::.::::....    .:.:     . .  
KIAA03 CGT--------DPESGDRCPE-LDAH--PSGPRDPNSAVVVTVGDELEAPEPITRGPTPQ
       430               440          450       460       470      

          510       520        530       540       550       560   
KIAA14 EVHANRLMRELDFAAC-VEERLDGVIPLARGGVVRQYWSSSFLVDLLAVAAPVVPTVLWA
       .  ::    .   ..: .::. ....   .    ..:::  ..::::::..:.:::: : 
KIAA03 RPGANPNPGQSVSVVCPMEEEEEAAVAEKEP---KSYWSRHYIVDLLAVVVPAVPTVAWL
        480       490       500          510       520       530   

           570       580       590       600              
KIAA14 FSTQRGGTDPVYNIGALLRGCCVVALHSLRRTAFRIKT             
         .::   .:.:::..::::::.:::::.:: . :                
KIAA03 CRSQRRQGQPIYNISSLLRGCCTVALHSIRRISCRSLSQPSPSPAGGGSQL
           540       550       560       570       580    




601 residues in 1 query   sequences
1986904 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:50 2008 done: Thu Dec 18 15:23:51 2008
 Total Scan time:  0.510 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]