hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03442658/chunk_1/iprscan-20080502-03442658.nocrc
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Query sequence: KIAA1469
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00369                                                  76.3    3.8e-18   7
SM00082                                                  48.2    1.1e-09   1
SM00013                                                  31.7     0.0001   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00013     1/1      43    75 ..     1    38 []    31.7   0.0001
SM00369     1/7      95   118 ..     1    24 []     4.3  1.2e+02
SM00369     2/7     140   165 ..     1    24 []     5.2       97
SM00369     3/7     169   189 ..     1    24 []     2.3  2.2e+02
SM00369     4/7     211   236 ..     1    24 []     7.7       48
SM00369     5/7     237   260 ..     1    24 []    11.7       15
SM00369     6/7     261   282 ..     1    24 []    16.5      3.7
SM00369     7/7     283   306 ..     1    24 []    28.5  0.00095
SM00082     1/1     318   369 ..     1    55 []    48.2  1.1e-09

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 43 to 75: score 31.7, E = 0.0001
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                       CP  C+C    +  ++C +r Lt  ++P ++P+d+t    
    KIAA1469    43    SCPSVCRCD---AGFIYCNDRFLT--SIPTGIPEDATT    75   

SM00369: domain 1 of 7, from 95 to 118: score 4.3, E = 1.2e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L + ++ +L +N L + P ++      
    KIAA1469    95    LLKVERIYLYHNSLDEFPTNLPKY    118  

SM00369: domain 2 of 7, from 140 to 165: score 5.2, E = 97
                   *->LpnLreLdLsnNqLtsLP..pgaFqg<-*
                       p L+eL+L++N  +++  ++gaF++   
    KIAA1469   140    IPYLEELHLDDNSVSAVSieEGAFRD    165  

SM00369: domain 3 of 7, from 169 to 189: score 2.3, E = 2.2e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                         Lr L Ls+N+L+++P g+ +    
    KIAA1469   169    ---LRLLFLSRNHLSTIPWGLPRT    189  

SM00369: domain 4 of 7, from 211 to 236: score 7.7, E = 48
                   *->LpnLreLdLsnNqL..tsLPpgaFqg<-*
                      L++L++L L++N L++  L + +F +   
    KIAA1469   211    LTSLKRLVLDGNLLnnHGLGDKVFFN    236  

SM00369: domain 5 of 7, from 237 to 260: score 11.7, E = 15
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L+nL+eL+L +N Lt+ P ++ +    
    KIAA1469   237    LVNLTELSLVRNSLTAAPVNLPGT    260  

SM00369: domain 6 of 7, from 261 to 282: score 16.5, E = 3.7
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                        nLr+L+L++N++ ++Pp+aF+    
    KIAA1469   261    --NLRKLYLQDNHINRVPPNAFSY    282  

SM00369: domain 7 of 7, from 283 to 306: score 28.5, E = 0.00095
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L +Ld snN+L+ LP+g+F++   
    KIAA1469   283    LRQLYRLDMSNNNLSNLPQGIFDD    306  

SM00082: domain 1 of 1, from 318 to 369: score 48.2, E = 1.1e-09
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      NP++C C ++w ++wl+   ++ ++ +   l+C  Pe++rG+ + +l
    KIAA1469   318    NPWYCGCKMKWVRDWLQS-LPVKVNVR--GLMCQAPEKVRGMAIKDL 361  

                   lpsefsCp<-*
                   ++  f+C+   
    KIAA1469   362 NAELFDCK    369  

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