hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03311564/chunk_1/iprscan-20080502-03311564.nocrc
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Query sequence: KIAA1461
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01429.10.fs Methyl-CpG binding domain                       18.2    0.00012   1
PF01429.10.ls Methyl-CpG binding domain                       16.6    0.00066   1
PF00855.8.ls PWWP domain                                      5.2     0.0043   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01429.10.ls   1/1      15    88 ..     1   129 []    16.6  0.00066
PF01429.10.fs   1/1      25    88 ..    11   129 .]    18.2  0.00012
PF00855.8.ls   1/1    1386  1449 ..     1    86 []     5.2   0.0043

Alignments of top-scoring domains:
PF01429.10.ls: domain 1 of 1, from 15 to 88: score 16.6, E = 0.00066
                   *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk
                       ++     + +p GW+R++                           +
    KIAA1461    15    DKEGGLPAIQVPVGWQRRV--------------------------DQ 35   

                   fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs
                   + V Y+sP+G  l+   +v+ YL + g+                      
    KIAA1461    36 NGVLYVSPSGSLLSCLEQVKTYLLTDGT---------------------- 63   

                   rarrngksnkKvs..vtslkledFdFttrkevgr<-*
                            +K++ +++ ++++ F+F+++  v     
    KIAA1461    64 ---------CKCGleCPLILPKVFNFDPGAAVKQ    88   

PF01429.10.fs: domain 1 of 1, from 25 to 88: score 18.2, E = 0.00012
                   *->LppGWrRetrqRksGssaNNNASNNNSATASNNnngkfDVyYysPtG
                      +p GW+R++                           ++ V Y+sP+G
    KIAA1461    25    VPVGWQRRV--------------------------DQNGVLYVSPSG 45   

                   kklrsksevarYLgkngdgkksvdaeirnelHtekrrkrsrarrngksnk
                     l+   +v+ YL + g+                               +
    KIAA1461    46 SLLSCLEQVKTYLLTDGT-------------------------------C 64   

                   Kvs..vtslkledFdFttrkevgr<-*
                   K++ +++ ++++ F+F+++  v     
    KIAA1461    65 KCGleCPLILPKVFNFDPGAAVKQ    88   

PF00855.8.ls: domain 1 of 1, from 1386 to 1449: score 5.2, E = 0.0043
                   *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr
                       f+ GDLVw+ +kG   WP+++v+  ++ +s                
    KIAA1461  1386    TFNVGDLVWGQIKGLTSWPGKLVREDDVHNSCQQ------------- 1419 

                   vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-*
                          +++  + v +++lk l ++  e++++ +kr     
    KIAA1461  1420 -------SPEE-GKVEPEKLKTL-TEGLEAYSRVRKRNR    1449 

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