hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03224853/chunk_1/iprscan-20080502-03224853.nocrc
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Query sequence: KIAA1456
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF08241.2.fs    Methyltransferase domain                 87.9    2.9e-23   1
PF08241.2.ls    Methyltransferase domain                 87.2    4.7e-23   1
PF08242.2.fs    Methyltransferase domain                 44.3    3.5e-11   1
PF08242.2.ls    Methyltransferase domain                 43.9    4.9e-10   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF08241.2.ls      1/1      16   106 ..     1    99 []    87.2  4.7e-23
PF08241.2.fs      1/1      18   106 ..     3    99 .]    87.9  2.9e-23
PF08242.2.fs      1/1      18   104 ..     3   106 .]    44.3  3.5e-11
PF08242.2.ls      1/1      18   104 ..     1   106 []    43.9  4.9e-10

Alignments of top-scoring domains:
PF08241.2.ls: domain 1 of 1, from 16 to 106: score 87.2, E = 4.7e-23
                   *->LDvGcGtGllaraLarrvgpgarvtGvDlspemlalArerapragle
                        +GcGtG++++  ++      + +G+D++ + +++Ar r+ +    
    KIAA1456    16    SLIGCGTGKYLKVNSQV-----HTVGCDYCGPLVEIARNRGCE---- 53   

                   nfvvgDaedLPfpDesFDlVvsslvlhhl..aedperalrEiaRVLKPGG
                     +v+D  +LPf+De FD+++s++v+hh+++++++ ra++E+aRVL PGG
    KIAA1456    54 -AMVCDNLNLPFRDEGFDAIISIGVIHHFstKQRRIRAIKEMARVLVPGG 102  

                   klvi<-*
                    l i   
    KIAA1456   103 QLMI    106  

PF08241.2.fs: domain 1 of 1, from 18 to 106: score 87.9, E = 2.9e-23
                   *->vGcGtGllaraLarrvgpgarvtGvDlspemlalArerapraglenf
                      +GcGtG++++  ++      + +G+D++ + +++Ar r+ +      
    KIAA1456    18    IGCGTGKYLKVNSQV-----HTVGCDYCGPLVEIARNRGCE-----A 54   

                   vvgDaedLPfpDesFDlVvsslvlhhl..aedperalrEiaRVLKPGGkl
                   +v+D  +LPf+De FD+++s++v+hh+++++++ ra++E+aRVL PGG l
    KIAA1456    55 MVCDNLNLPFRDEGFDAIISIGVIHHFstKQRRIRAIKEMARVLVPGGQL 104  

                   vi<-*
                    i   
    KIAA1456   105 MI    106  

PF08242.2.fs: domain 1 of 1, from 18 to 104: score 44.3, E = 3.5e-11
                   *->iGcGtGrllralleallnpgleytgvDiSp.aleiaaaaerlaalgl
                      iGcGtG      l+   n +++ +g+D+  +++e  +a++r  + + 
    KIAA1456    18    IGCGTG----KYLKV--NSQVHTVGCDYCGpLVE--IARNR--GCEA 54   

                   .da.rveldvldlidedpgeqgfesfDvvvasnvLhhldpedpr.evLrn
                    ++++++l+ +d             fD++++++v+hh++ +++r +++++
    KIAA1456    55 mVCdNLNLPFRDE-----------GFDAIISIGVIHHFSTKQRRiRAIKE 93   

                   lrrlLkPGGvl<-*
                   ++r+L PGG l   
    KIAA1456    94 MARVLVPGGQL    104  

PF08242.2.ls: domain 1 of 1, from 18 to 104: score 43.9, E = 4.9e-10
                   *->LeiGcGtGrllralleallnpgleytgvDiSp.aleiaaaaerlaal
                        iGcGtG      l+   n +++ +g+D+  +++e  +a++r  + 
    KIAA1456    18    --IGCGTG----KYLKV--NSQVHTVGCDYCGpLVE--IARNR--GC 52   

                   gl.da.rveldvldlidedpgeqgfesfDvvvasnvLhhldpedpr.evL
                   +  ++++++l+ +d             fD++++++v+hh++ +++r +++
    KIAA1456    53 EAmVCdNLNLPFRDE-----------GFDAIISIGVIHHFSTKQRRiRAI 91   

                   rnlrrlLkPGGvl<-*
                   ++++r+L PGG l   
    KIAA1456    92 KEMARVLVPGGQL    104  

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