hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03204397/chunk_1/iprscan-20080502-03204397.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1455 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01643 YD_repeat_2x: YD repeat (two copies) 83.6 2.1e-22 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01643 1/6 1298 1339 .. 1 42 [] 14.6 0.098 TIGR01643 2/6 1362 1403 .. 1 42 [] 25.7 5.5e-05 TIGR01643 3/6 1574 1614 .. 1 42 [] 21.3 0.0011 TIGR01643 4/6 1883 1924 .. 1 42 [] 10.0 0.87 TIGR01643 5/6 1958 2000 .. 1 42 [] 10.1 0.84 Alignments of top-scoring domains: TIGR01643: domain 1 of 6, from 1298 to 1339: score 14.6, E = 0.098 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* y+++++++++td +g+t r d v++ +pd+++ l+ KIAA1455 1298 YSNDNDITAVTDSNGNTLRIRRDPNRMPVRVVSPDNQVIWLT 1339 TIGR01643: domain 2 of 6, from 1362 to 1403: score 25.7, E = 5.5e-05 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* +++ g l++ d+ g+tt ++yd++grl+ +t p g +t l+ KIAA1455 1362 HGNSGLLATKSDETGWTTFFDYDSEGRLTNVTFPTGVVTNLH 1403 TIGR01643: domain 3 of 6, from 1574 to 1614: score 21.3, E = 0.0011 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* y+ g+++++ +++yd++gr+v++ +dg+++s++ KIAA1455 1574 YSSTGQIASIQRGTT-SEKVDYDGQGRIVSRVFADGKTWSYT 1614 TIGR01643: domain 4 of 6, from 1883 to 1924: score 10.0, E = 0.87 *->ydaagrllgstdpdgtttrytydaagrlveetdpdggstsle<-* yd +g+l ++ + +ry+yd g+l + ++ + KIAA1455 1883 YDVDGQLQTVYLNEKIMWRYNYDLNGNLHLLNPSNSARLTPL 1924 TIGR01643: domain 5 of 6, from 1958 to 2000: score 10.1, E = 0.84 *->ydaagrllgstdpd.gtttrytydaagrlveetdpdggstsle<-* y+ g l+++ ++g+t+ y yd++gr+v+ + g+ ++ KIAA1455 1958 YSSKGLLTRVYSKGsGWTVIYRYDGLGRRVSSKTSLGQHLQFF 2000 //