hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03172696/chunk_1/iprscan-20080502-03172696.nocrc
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Query sequence: KIAA1453
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase          195.4    8.5e-63   1
PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase          197.1    3.7e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00443.19.fs   1/1     121   422 ..     1   318 []   195.4  8.5e-63
PF00443.19.ls   1/1     121   422 ..     1   318 []   197.1  3.7e-56

Alignments of top-scoring domains:
PF00443.19.fs: domain 1 of 1, from 121 to 422: score 195.4, E = 8.5e-63
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                         +GL NlGNTC++N+++QcL+ +ppl++y+ls +++     + + 
    KIAA1453   121    RVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHA-----RSCH 162  

                RF xxxxxxxxxxxx xxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcalad.Lfnalqsg.yksvapsplkflkqfkltlgkineefsg
                   + + ++lc ++ ++++a+ ++++  +++s +++       l+ki++ f  
    KIAA1453   163 QGSFCMLCVMQNhIVQAFANSgNAIKPVSFIRD-------LKKIARHFRF 205  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ymQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhl
                   ++Q+DAhEFl++ +d++++++   + ++++ +                  
    KIAA1453   206 GNQEDAHEFLRYTIDAMQKACLN-GCAKLDRQ------------------ 236  

                RF xxxxxxxxxxxxxxxxx                                 
                   trnesiitdlFqGqlks.................................
                   t  +++++++F+G+l+s+ +++ +++ +++ ++  +   + ++  +  + 
    KIAA1453   237 TQATTLVHQIFGGYLRSrvkcsvcksvsdtydpyldvaleirqaanivra 286  

                RF                              xxxxxxxxxxxxxxxxxxxxx
                   .............................klkikrLPpvLiihLKRFsyn
                    +   + +  ++++   + +++++ + +++++i+r   vL++ LKRF + 
    KIAA1453   287 lelfvkadvlsgenaymcakckkkvpaskRFTIHRTSNVLTLSLKRFANF 336  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   getglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqr
                       +  Ki + V +P++L++ +y++++                      
    KIAA1453   337 ----SGGKITKDVGYPEFLNIRPYMSQN---------------------- 360  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikk
                                      + +p +Y LyaV+vHsG+s + GHY++y+  
    KIAA1453   361 -------------------NGDPVMYGLYAVLVHSGYSCHAGHYYCYV-- 389  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   kkengkWykfDDekVsevteeevlersssAYiLFY<-*
                   k++ng+Wy  +D+ V  +++  v  ++++AY+LFY   
    KIAA1453   390 KASNGQWYQMNDSLVHSSNVKVV--LNQQAYVLFY    422  

PF00443.19.ls: domain 1 of 1, from 121 to 422: score 197.1, E = 3.7e-56
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl
                         +GL NlGNTC++N+++QcL+ +ppl++y+ls +++     + + 
    KIAA1453   121    RVGAGLHNLGNTCFLNATIQCLTYTPPLANYLLSKEHA-----RSCH 162  

                RF xxxxxxxxxxxx xxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcalad.Lfnalqsg.yksvapsplkflkqfkltlgkineefsg
                   + + ++lc ++ ++++a+ ++++  +++s +++       l+ki++ f  
    KIAA1453   163 QGSFCMLCVMQNhIVQAFANSgNAIKPVSFIRD-------LKKIARHFRF 205  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ymQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhl
                   ++Q+DAhEFl++ +d++++++   + ++++ +                  
    KIAA1453   206 GNQEDAHEFLRYTIDAMQKACLN-GCAKLDRQ------------------ 236  

                RF xxxxxxxxxxxxxxxxx                                 
                   trnesiitdlFqGqlks.................................
                   t  +++++++F+G+l+s+ +++ +++ +++ ++  +   + ++  +  + 
    KIAA1453   237 TQATTLVHQIFGGYLRSrvkcsvcksvsdtydpyldvaleirqaanivra 286  

                RF                              xxxxxxxxxxxxxxxxxxxxx
                   .............................klkikrLPpvLiihLKRFsyn
                    +   + +  ++++   + +++++ + +++++i+r   vL++ LKRF + 
    KIAA1453   287 lelfvkadvlsgenaymcakckkkvpaskRFTIHRTSNVLTLSLKRFANF 336  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   getglnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqr
                       +  Ki + V +P++L++ +y++++                      
    KIAA1453   337 ----SGGKITKDVGYPEFLNIRPYMSQN---------------------- 360  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dedgnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikk
                                      + +p +Y LyaV+vHsG+s + GHY++y+  
    KIAA1453   361 -------------------NGDPVMYGLYAVLVHSGYSCHAGHYYCYV-- 389  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   kkengkWykfDDekVsevteeevlersssAYiLFY<-*
                   k++ng+Wy  +D+ V  +++  v  ++++AY+LFY   
    KIAA1453   390 KASNGQWYQMNDSLVHSSNVKVV--LNQQAYVLFY    422  

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