hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03105112/chunk_1/iprscan-20080502-03105112.nocrc
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Query sequence: KIAA1449
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 201.6    7.2e-56   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      17    61 ..     1    46 []    18.9     0.49
SM00320    2/7      67   106 ..     1    46 []    39.2  5.5e-07
SM00320    3/7     109   148 ..     1    46 []    37.1  2.4e-06
SM00320    4/7     160   199 ..     1    46 []    31.8  9.7e-05
SM00320    5/7     202   241 ..     1    46 []    42.7  4.9e-08
SM00320    6/7     244   283 ..     1    46 []    28.7  0.00078
SM00320    7/7     353   391 ..     1    46 []     3.2  1.6e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 17 to 61: score 18.9, E = 0.49
                   *->t.kllrtlk.....gHtgespVtsvafspdggssdspnllasgs.Dg
                      + ++ ++++++ ++  ++  +V++++ +p        n+l+++++D+
    KIAA1449    17    KvQVSYVIRdevekYNRN--GVNALQLDPAL------NRLFTAGrDS 55   

                   tirlWd<-*
                    ir+W+   
    KIAA1449    56 IIRIWS    61   

SM00320: domain 2 of 7, from 67 to 106: score 39.2, E = 5.5e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +++++ Ht+  +V+++  + +g      + l+s+s+D t+++W
    KIAA1449    67    QdPYIASMEHHTD--WVNDIVLCCNG------KTLISASsDTTVKVW 105  

                   d<-*
                   +   
    KIAA1449   106 N    106  

SM00320: domain 3 of 7, from 109 to 148: score 37.1, E = 2.4e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ + +tl+ H++  +V ++a+  d       +l+as++ D++i lW
    KIAA1449   109    KgFCMSTLRTHKD--YVKALAYAKDK------ELVASAGlDRQIFLW 147  

                   d<-*
                   d   
    KIAA1449   148 D    148  

SM00320: domain 4 of 7, from 160 to 199: score 31.8, E = 9.7e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +++l+g ++  +++s+a ++ g      ++++sgs+ + +r+W
    KIAA1449   160    NtVTTSSLSGNKD--SIYSLAMNQLG------TIIVSGStEKVLRVW 198  

                   d<-*
                   d   
    KIAA1449   199 D    199  

SM00320: domain 5 of 7, from 202 to 241: score 42.7, E = 4.9e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t   l++lkgHt+   V ++  + dg      ++ +sgs+DgtirlW
    KIAA1449   202    TcAKLMKLKGHTD--NVKALLLNRDG------TQCLSGSsDGTIRLW 240  

                   d<-*
                   +   
    KIAA1449   241 S    241  

SM00320: domain 6 of 7, from 244 to 283: score 28.7, E = 0.00078
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++++t++ H+   +V+++++++        ++++sg++D++i++ 
    KIAA1449   244    QqRCIATYRVHDE--GVWALQVNDAF------THVYSGGrDRKIYCT 282  

                   d<-*
                   d   
    KIAA1449   283 D    283  

SM00320: domain 7 of 7, from 353 to 391: score 3.2, E = 1.6e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++ +++k   +  ++  + +  d       +++++ ++++++  W
    KIAA1449   353    CtQPDQVIK-GGA--SIIQCHILNDK------RHILTKDtNNNVAYW 390  

                   d<-*
                   d   
    KIAA1449   391 D    391  

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