hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03091475/chunk_1/iprscan-20080502-03091475.nocrc
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Query sequence: KIAA1448
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 600.6   5.7e-176   1
SM00240                                                  31.7    9.9e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      29   382 ..     1   404 []   600.6 5.7e-176
SM00240     1/1     535   592 ..     1    49 []    31.7  9.9e-05

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 29 to 382: score 600.6, E = 5.7e-176
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv....tvtvn...
                        +++VavRv   RP+n rE+s +    s++++++++++t ++n+++
    KIAA1448    29    GASVKVAVRV---RPFNSRETSKE----SKCIIQMqgnsTSIINpkn 68   

                   .......FtFDkVFW....rydvddpsasQedVFeevaaPLvdsaldGYN
                   +++ +++F+FD+++W+++++  +d+ +asQ  V+++++++++ +a++GYN
    KIAA1448    69 pkeapksFSFDYSYWshtsP--EDPCFASQNRVYNDIGKEMLLHAFEGYN 116  

                   vaTIFAYGQTGSGKTyTMsGtptdpgilsndladitpdepGiIPRaledl
                   v +IFAYGQTG+GK+yTM+G  ++              ++GiIP  +e+l
    KIAA1448   117 V-CIFAYGQTGAGKSYTMMGKQEE-------------SQAGIIPQLCEEL 152  

                   Fekide.......fsVkvSylEIYNEkirDLLspspenSksrGkhakqss
                   Feki+++ +++ ++sV+vSy+EIY+E++rDLL+p++              
    KIAA1448   153 FEKINDncneemsYSVEVSYMEIYCERVRDLLNPKN-------------- 188  

                   kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle
                   k++Lr+rE++                 g+yV++L+   V+S+ ++ +l++
    KIAA1448   189 KGNLRVREHPL---------------LGPYVEDLSKLAVTSYTDIADLMD 223  

                   rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadektesstnegt
                    Gnk RtvaaT+mNe SSRSHa+Fti+ +qk            +  +   
    KIAA1448   224 AGNKARTVAATNMNETSSRSHAVFTIVFTQK-----------KHDNETNL 262  

                   eqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLlaLGnVInA
                   ++ k+sk++LVDLAGSERa++Tg  a G RLkE++nINkSL++LG+VI+A
    KIAA1448   263 STEKVSKISLVDLAGSERADSTG--AKGTRLKEGANINKSLTTLGKVISA 310  

                   LaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNsKTlMIan
                   La+            ++++k  +IPYRDS+LT+LL++ LGGNs+T+M+a 
    KIAA1448   311 LAE----------VSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAA 350  

                   vSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                   +SP+++ny+ETlsTLr+A+Rak+Ik+++++ne   
    KIAA1448   351 LSPADINYDETLSTLRYADRAKQIKCNAVINE    382  

SM00240: domain 1 of 1, from 535 to 592: score 31.7, E = 9.9e-05
                   *->tvtiGRss....cdivlpspsiSRrHaeiv..dgd......yliDlg
                       +++G +  +++ divl+++ i  +H++++++++++++    l+++ 
    KIAA1448   535    ITRVGQADaerrQDIVLSGAHIKEEHCIFRseRSNsgevivTLEPCE 581  

                   enSsNGTfVNgrrv<-*
                      +  T+VNg+rv   
    KIAA1448   582 ---RSETYVNGKRV    592  

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