hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03005282/chunk_1/iprscan-20080502-03005282.nocrc
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Query sequence: KIAA1443
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00389                                                  49.9    3.4e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00389    1/2      79   141 ..     1    63 []    10.8    0.042
SM00389    2/2     380   442 ..     1    63 []    39.0  6.2e-07

Alignments of top-scoring domains:
SM00389: domain 1 of 2, from 79 to 141: score 10.8, E = 0.042
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                           ++   +  e L k F   pYPs +++  L  + gL+ + Vk+
    KIAA1443    79    WTQAAQTSELDSNEHLLKTFSYFPYPSLADIALLCLRYGLQMEKVKT 125  

                   WFQNRRakwkrqekkk<-*
                   WF  +R ++  ++ ++   
    KIAA1443   126 WFMAQRLRCGISWSSE    141  

SM00389: domain 2 of 2, from 380 to 442: score 39.0, E = 6.2e-07
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      ++rk  + t+eQl++L+ +F ++++  re+ ++L + +gL++  +  
    KIAA1443   380    RQRKTKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 426  

                   WFQNRRakwkrqekkk<-*
                   WF   R+ +k+ + k+   
    KIAA1443   427 WFGDTRYALKHGQLKW    442  

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