hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03005282/chunk_1/iprscan-20080502-03005282.nocrc
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Query sequence: KIAA1443
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00046.19.ls Homeobox domain                                  1.4     0.0033   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00046.19.ls   1/1     383   437 ..     1    57 []     1.4   0.0033

Alignments of top-scoring domains:
PF00046.19.ls: domain 1 of 1, from 383 to 437: score 1.4, E = 0.0033
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      + kR   t+eQl +L+ +F +++   re+ ++L + +gL+   +  W
    KIAA1443   383    KTKR--KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQW 427  

                   FQNRRaKwKk<-*
                   F   R+  K    
    KIAA1443   428 FGDTRYALKH    437  

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