# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj01820b.fasta.huge -Q ../query/KIAA1443.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1443, 573 aa
 vs ./tmplib.24314 library

1986932 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 11.0133+/-0.0103; mu= -11.8795+/- 0.701
 mean_var=402.8904+/-95.191, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.063897

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0395  ( 1003 res)   fg04028s1                  (1003)  279 39.8  0.0013


>>KIAA0395  ( 1003 res)   fg04028s1                       (1003 aa)
 initn: 554 init1: 259 opt: 279  Z-score: 157.0  bits: 39.8 E(): 0.0013
Smith-Waterman score: 366;  22.776% identity (50.890% similar) in 562 aa overlap (1-542:455-949)

                                              10        20         
KIAA14                               AAAPGSN-PTPTRRPPALSPTSPRPMVRGW
                                     :: ::     :     .:  :.:  :. : 
KIAA03 TVIQSVPQPTITVLNTPLVASAGNVQHLIQAALPGHVVGQPEGTGGGLLVTQPL-MANGL
          430       440       450       460       470        480   

      30         40        50        60               70        80 
KIAA14 EPPPG-LDCAISEGHKSEGTMPPNKEASGLSSS-------PAGLICLPPISEELQLVWTQ
       .   . :  ...   :. :. : :   :. .:.        . :   : :. .   .. .
KIAA03 QATSSPLPLTVTSVPKQPGVAPINTVCSNTTSAVKVVNAAQSLLTACPSITSQ---AFLD
           490       500       510       520       530          540

              90          100       110       120       130        
KIAA14 AAQTSELDSNEHL--LK-TFSYFPYPSLADIALLCLRYGLQMEKVKTWFMAQRLRCGISW
       :.  ..  :.:.:  :: .:    .:. ...  :    ::. ..:. ::  .: .:    
KIAA03 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHC----
              550       560       570       580       590          

      140       150       160       170       180       190        
KIAA14 SSEEIEETRARVVYRRDQLHFKSLLSFTHHAGRPPEEVPPPPVPAPEQVGIGIGPPTLSK
         .... .:: .   .... . :.          ::    :   .:: . :       ..
KIAA03 --RNLKGSRAMIPGDHSSIIIDSV----------PEVSFSPSSKVPEVTCIPTTATLATH
          600       610                 620       630       640    

      200        210         220       230       240       250     
KIAA14 PT-QTKGLKVEPE-EPSQMPP-LPQSHQKLKESLMTPGSGAFPYQSDFWQHLQSSGLSKE
       :. . .. .  :.  :...    :.. . :. :.   ... .: . .. .  . . ....
KIAA03 PSAKRQSWHQTPDFTPTKYKERAPEQLRALESSF---AQNPLPLDEELDRLRSETKMTRR
          650       660       670          680       690       700 

         260       270       280       290       300       310     
KIAA14 QAGRGPNQSHGIGTASWNHSTTVPQPQARDKPPPIALIASSCKEESASSVTPSSSSTSSS
       .              ::  :    . .:..     :   .: .:: :.    .  . .: 
KIAA03 EID------------SW-FSERRKKVNAEETKK--AEENASQEEEEAAEDEGGEEDLASE
                          710       720         730       740      

         320       330       340       350       360         370   
KIAA14 FQVLANGATAASKPLQPLGCVPQSVSPSEQALPPHLEPAWPQGLRHNSVPG--RVGPTEY
       ..: .....      . :  . ..::: .  :  .:. .  .:  .: .::     : . 
KIAA03 LRVSGENGSLEMPSSHIL--AERKVSPIKINLK-NLRVTEANG--RNEIPGLGACDPEDD
        750       760         770        780         790       800 

           380          390       400       410       420       430
KIAA14 LSPDMQRQRKTK---RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGD
        :  . .:   :   .:: .:  .:...:.: ::   .::...   :::::::...::::
KIAA03 ESNKLAEQLPGKVSCKKTAQQRHLLRQLFVQTQWPSNQDYDSIMAQTGLPRPEVVRWFGD
             810       820       830       840       850       860 

              440       450       460       470       480       490
KIAA14 TRYALKHGQLKWFRDNAVPGAPSFQDPAIPTPPPSTRSLNERAETPPLPIPPPPPDIQPL
       .:::::.:::::..:                         .:.. ::  .   : . . :
KIAA03 SRYALKNGQLKWYEDY------------------------KRGNFPPGLLVIAPGNRELL
             870                               880       890       

              500       510       520       530       540       550
KIAA14 ERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPAEVVVCLDEEEEEEEEELPE
       . :. .:..: : :. .: . ...:.::: .::  .. . ...:.    :..        
KIAA03 QDYYMTHKMLYEEDLQNLCDKTQMSSQQVKQWFAEKMGEETRAVADTGSEDQGPGTTELT
       900       910       920       930       940       950       

              560       570                          
KIAA14 DDEEEEEEEEDDDDDDDDVIIQD                       
                                                     
KIAA03 AVHKGMGDTYSEVSENSESWEPRVPEASSEPFDTSSPQAGRQLETD
       960       970       980       990      1000   




573 residues in 1 query   sequences
1986932 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:22:40 2008 done: Thu Dec 18 15:22:41 2008
 Total Scan time:  0.490 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]