hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02572999/chunk_1/iprscan-20080502-02572999.nocrc
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Query sequence: KIAA1441
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 252.8    2.7e-71  14

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/14    554   574 ..     1    23 []     6.7       56
SM00355      2/14    582   606 ..     1    23 []    11.3       17
SM00355      3/14    694   714 ..     1    23 []     5.0       87
SM00355      4/14    726   748 ..     1    23 []    18.6     0.87
SM00355      5/14    754   778 ..     1    23 []     8.0       39
SM00355      6/14    785   808 ..     1    23 []    21.9    0.088
SM00355      7/14    813   836 ..     1    23 []    20.6     0.21
SM00355      8/14    848   870 ..     1    23 []    21.9    0.092
SM00355      9/14    879   902 ..     1    23 []    23.6    0.027
SM00355     10/14    984  1007 ..     1    23 []    21.8    0.099
SM00355     11/14   1014  1037 ..     1    23 []    27.7   0.0016
SM00355     12/14   1044  1070 ..     1    23 []    19.3     0.54
SM00355     13/14   1156  1179 ..     1    23 []    19.2      0.6
SM00355     14/14   1221  1243 ..     1    23 []    27.3   0.0021

Alignments of top-scoring domains:
SM00355: domain 1 of 14, from 554 to 574: score 6.7, E = 56
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cg  fs +++L rH+      
    KIAA1441   554    YRCLE-CGDAFSLEkSLARHYD--    574  

SM00355: domain 2 of 14, from 582 to 606: score 11.3, E = 17
                   *->ykCpigCg..ksfssk.aLkrHmrvH<-*
                       +C++ C ++ +f +k +L  H r H   
    KIAA1441   582    VTCNH-CArrLVFFNKcSLLLHAREH    606  

SM00355: domain 3 of 14, from 694 to 714: score 5.0, E = 87
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C + C++++++k  +  H +     
    KIAA1441   694    FRCLE-CKEQCRDKaGMAAHFQ--    714  

SM00355: domain 4 of 14, from 726 to 748: score 18.6, E = 0.87
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp  C++  +++ ++  H+r+H   
    KIAA1441   726    NVCPT-CPMMLPNRcSFSAHQRMH    748  

SM00355: domain 5 of 14, from 754 to 778: score 8.0, E = 39
                   *->ykCpigCgksfsskaLkrHmr...vH<-*
                      ++Cp+ Cg  f +++++ H+r+   H   
    KIAA1441   754    HVCPE-CGGNFLQANFQTHLReacLH    778  

SM00355: domain 6 of 14, from 785 to 808: score 21.9, E = 0.088
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+Cp  C+ +f   ++ k H++++H   
    KIAA1441   785    YRCPS-CSVVFGGVnSIKSHIQtSH    808  

SM00355: domain 7 of 14, from 813 to 836: score 20.6, E = 0.21
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kCpi C++ f+s ++   H++++H   
    KIAA1441   813    HKCPI-CPMAFKSGpSAHAHLYsQH    836  

SM00355: domain 8 of 14, from 848 to 870: score 21.9, E = 0.092
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC + C+ +f++k+ L  H  +H   
    KIAA1441   848    YKCAM-CDTVFTHKpLLSSHFDQH    870  

SM00355: domain 9 of 14, from 879 to 902: score 23.6, E = 0.027
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kCp  C+  f +k+ + +H++++H   
    KIAA1441   879    FKCPS-CPLLFAQKrTMLEHLKnTH    902  

SM00355: domain 10 of 14, from 984 to 1007: score 21.8, E = 0.099
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C+  f+ +++++ Hm++ H   
    KIAA1441   984    WTCGL-CHSWFPERdEYVAHMKkEH    1007 

SM00355: domain 11 of 14, from 1014 to 1037: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C + C +sf+s+++L+rH+r  H   
    KIAA1441  1014    FPCRL-CERSFCSApSLRRHVRvNH    1037 

SM00355: domain 12 of 14, from 1044 to 1070: score 19.3, E = 0.54
                   *->ykCpigCg...ksfssk.aLkrHmr.vH<-*
                      y C + C +++++fss+  L++H++ +H   
    KIAA1441  1044    YPCRY-CTegkRTFSSRlILEKHVQvRH    1070 

SM00355: domain 13 of 14, from 1156 to 1179: score 19.2, E = 0.6
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                       +C   Cg +f s+++L rH   +H   
    KIAA1441  1156    QQCLD-CGLCFASPgSLSRHRFiSH    1179 

SM00355: domain 14 of 14, from 1221 to 1243: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgks+ s+ +Lk H r+H   
    KIAA1441  1221    LTCKV-CGKSCDSPlNLKTHFRTH    1243 

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