hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02572999/chunk_1/iprscan-20080502-02572999.nocrc
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Query sequence: KIAA1441
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         202.9    6.7e-58  13
PF00096.16.fs Zinc finger, C2H2 type                         191.6    1.7e-54  14

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   7/13    848   870 ..     1    24 []    21.2   0.0035
PF00096.16.ls   8/13    879   902 ..     1    24 []    19.8   0.0094
PF00096.16.fs  11/14   1014  1037 ..     1    24 []    23.7  0.00012
PF00096.16.ls  10/13   1014  1037 ..     1    24 []    25.7  0.00016
PF00096.16.ls  12/13   1156  1179 ..     1    24 []    21.3   0.0031
PF00096.16.ls  13/13   1221  1243 ..     1    24 []    23.8  0.00058

Alignments of top-scoring domains:
PF00096.16.ls: domain 7 of 13, from 848 to 870: score 21.2, E = 0.0035
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC   C+++F++k  L +H   H   
    KIAA1441   848    YKCA-MCDTVFTHKPLLSSHFDQH    870  

PF00096.16.ls: domain 8 of 13, from 879 to 902: score 19.8, E = 0.0094
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kCp  C   F +k ++  Hl+ +H   
    KIAA1441   879    FKCP-SCPLLFAQKRTMLEHLKNtH    902  

PF00096.16.fs: domain 11 of 14, from 1014 to 1037: score 23.7, E = 0.00012
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C   C +sF++  +L+rH r++H   
    KIAA1441  1014    FPCR-LCERSFCSAPSLRRHVRVnH    1037 

PF00096.16.ls: domain 10 of 13, from 1014 to 1037: score 25.7, E = 0.00016
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C   C +sF++  +L+rH r++H   
    KIAA1441  1014    FPCR-LCERSFCSAPSLRRHVRVnH    1037 

PF00096.16.ls: domain 12 of 13, from 1156 to 1179: score 21.3, E = 0.0031
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C  dCg +F ++++L rH+ ++H   
    KIAA1441  1156    QQCL-DCGLCFASPGSLSRHRFIsH    1179 

PF00096.16.ls: domain 13 of 13, from 1221 to 1243: score 23.8, E = 0.00058
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cgks+ ++ nLk+H rtH   
    KIAA1441  1221    LTCK-VCGKSCDSPLNLKTHFRTH    1243 

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