hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02541062/chunk_1/iprscan-20080502-02541062.nocrc
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Query sequence: KIAA1439
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00523                                                  87.4    1.7e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00523    1/1     119   227 ..     1   124 []    87.4  1.7e-21

Alignments of top-scoring domains:
SM00523: domain 1 of 1, from 119 to 227: score 87.4, E = 1.7e-21
                   *->eeekwakkavesLvKkLKkkNkqqLeeLlqAVeSkgkpptrCvtipr
                      +++kwa++++ +L+K++  +    +e+++  V++k  p   Cv+++ 
    KIAA1439   119    VKQKWASRLLAKLRKDIRPE---YREDFVLTVTGKKPP--CCVLSN- 159  

                   eRslDgRlqvsdpl.QadrkglPhVlycRLfRWPDLqsddkhELKalptC
                    ++++g+++++d+l+Qad+++++++++++Lf+ ++L+s+d+++L + p+C
    KIAA1439   160 -PDQKGKMRRIDCLrQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQC 208  

                   qyafesksnpegevCcNPYHYsrverpe<-*
                     ++         +C+ P+H+ +++ +    
    KIAA1439   209 SNPG---------LCVQPHHIGVSVKEL    227  

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