hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02541062/chunk_1/iprscan-20080502-02541062.nocrc
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Query sequence: KIAA1439
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00859.9.ls CTF/NF-I family transcription modulation reg   285.3    1.1e-82   1
PF00859.9.fs CTF/NF-I family transcription modulation reg   283.4    4.1e-82   1
PF03165.7.fs MH1 domain                                     133.0    1.2e-37   1
PF03165.7.ls MH1 domain                                     134.9    2.1e-37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03165.7.fs   1/1     117   224 ..     1   120 []   133.0  1.2e-37
PF03165.7.ls   1/1     117   224 ..     1   120 []   134.9  2.1e-37
PF00859.9.fs   1/1     266   561 .]     1   300 []   283.4  4.1e-82
PF00859.9.ls   1/1     266   561 .]     1   300 []   285.3  1.1e-82

Alignments of top-scoring domains:
PF03165.7.fs: domain 1 of 1, from 117 to 224: score 133.0, E = 1.2e-37
                   *->ekwlekavesLlKKLKkkk..qqleeLlqAVeSrGdppktkCvtIpn
                       + ++k++++Ll KL+k+++++++e+++++V+  G++p  +C++++ 
    KIAA1439   117    PEVKQKWASRLLAKLRKDIrpEYREDFVLTVT--GKKP--PCCVLS- 158  

                   rsLdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeya
                            n+++kg++++i+CLRqad++wR+ DL++ +++K+ip ++++
    KIAA1439   159 ---------NPDQKGKMRRIDCLRQADKVWRL-DLVMVILFKGIPLESTD 198  

                   gfeskkdeaC.nPyvCiNPYHysRve<-*
                   g+++ k+ +C+nP++C++P+H+ +++   
    KIAA1439   199 GERLVKSPQCsNPGLCVQPHHIGVSV    224  

PF03165.7.ls: domain 1 of 1, from 117 to 224: score 134.9, E = 2.1e-37
                   *->ekwlekavesLlKKLKkkk..qqleeLlqAVeSrGdppktkCvtIpn
                       + ++k++++Ll KL+k+++++++e+++++V+  G++p  +C++++ 
    KIAA1439   117    PEVKQKWASRLLAKLRKDIrpEYREDFVLTVT--GKKP--PCCVLS- 158  

                   rsLdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeya
                            n+++kg++++i+CLRqad++wR+ DL++ +++K+ip ++++
    KIAA1439   159 ---------NPDQKGKMRRIDCLRQADKVWRL-DLVMVILFKGIPLESTD 198  

                   gfeskkdeaC.nPyvCiNPYHysRve<-*
                   g+++ k+ +C+nP++C++P+H+ +++   
    KIAA1439   199 GERLVKSPQCsNPGLCVQPHHIGVSV    224  

PF00859.9.fs: domain 1 of 1, from 266 to 561: score 283.4, E = 4.1e-82
                   *->qeSFVtSGVFsVtELiqVSRTPvvqGTGpNFslGELqghlaYdlnps
                      q+SFVtSGVFsVtEL++VS TP+  GTGpNFsl  L +  +Y   p 
    KIAA1439   266    QDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPG 312  

                   gigLrRtLpStsS.SGSKRhKsgSieedvdtSPgGd.yYt....SPsSPt
                      +rR+LpStsS+S  KR K  S+e+++d SPg +++Yt++++SP S  
    KIAA1439   313 A--MRRSLPSTSStSSTKRLK--SVEDEMD-SPGEEpFYTgqgrSPGSGS 357  

                   assRnWtEddeggsSp.tvKKpEldKspFsspSPQDsSPRLSsFtQHHrP
                    ss  W+E   g+ Sp+t+KK+  +Ks FsspSP   S     FtQHHrP
    KIAA1439   358 QSS-GWHEVEPGMPSPtTLKKS--EKSGFSSPSPSQTSSLGTAFTQHHRP 404  

                   GiPviAvhsglaRsPh.ssspLhFPtqsiLPqaaStYFpHtaIRYPPHLN
                         v  g   sPh ++s+LhFPt+ i  q +  YF+H+aIRY     
    KIAA1439   405 ------VITGPRASPHaTPSTLHFPTSPIIQQ-PGPYFSHPAIRY----H 443  

                   PQDpLKdlVsLacdpsSqQpgp.....lNgSGQvkvkshglstqvLAPpP
                   PQ +LK++V L c  + qQ g+ +  ++NgS Q kv  + l t++L PpP
    KIAA1439   444 PQETLKEFVQLVCPDAGQQAGQvgflnPNGSSQGKVHNPFLPTPMLPPPP 493  

                   PGlprlalr...pvTk.tmTdskgittSPTspaYsapgTspaNRSfVGLg
                   P      ++ + p+Tk+++T ++g++ SPTsp+Ys p+TspaNR fV  g
    KIAA1439   494 PPPMARPVPlpvPDTKpPTTSTEGGAASPTSPTYSTPSTSPANR-FVSVG 542  

                   PRdPsfi...yQaQsRiCDWylg<-*
                   PRdPsf++ + Q Qs    Wylg   
    KIAA1439   543 PRDPSFVnipQQTQS----WYLG    561  

PF00859.9.ls: domain 1 of 1, from 266 to 561: score 285.3, E = 1.1e-82
                   *->qeSFVtSGVFsVtELiqVSRTPvvqGTGpNFslGELqghlaYdlnps
                      q+SFVtSGVFsVtEL++VS TP+  GTGpNFsl  L +  +Y   p 
    KIAA1439   266    QDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPG 312  

                   gigLrRtLpStsS.SGSKRhKsgSieedvdtSPgGd.yYt....SPsSPt
                      +rR+LpStsS+S  KR K  S+e+++d SPg +++Yt++++SP S  
    KIAA1439   313 A--MRRSLPSTSStSSTKRLK--SVEDEMD-SPGEEpFYTgqgrSPGSGS 357  

                   assRnWtEddeggsSp.tvKKpEldKspFsspSPQDsSPRLSsFtQHHrP
                    ss  W+E   g+ Sp+t+KK+  +Ks FsspSP   S     FtQHHrP
    KIAA1439   358 QSS-GWHEVEPGMPSPtTLKKS--EKSGFSSPSPSQTSSLGTAFTQHHRP 404  

                   GiPviAvhsglaRsPh.ssspLhFPtqsiLPqaaStYFpHtaIRYPPHLN
                         v  g   sPh ++s+LhFPt+ i  q +  YF+H+aIRY     
    KIAA1439   405 ------VITGPRASPHaTPSTLHFPTSPIIQQ-PGPYFSHPAIRY----H 443  

                   PQDpLKdlVsLacdpsSqQpgp.....lNgSGQvkvkshglstqvLAPpP
                   PQ +LK++V L c  + qQ g+ +  ++NgS Q kv  + l t++L PpP
    KIAA1439   444 PQETLKEFVQLVCPDAGQQAGQvgflnPNGSSQGKVHNPFLPTPMLPPPP 493  

                   PGlprlalr...pvTk.tmTdskgittSPTspaYsapgTspaNRSfVGLg
                   P      ++ + p+Tk+++T ++g++ SPTsp+Ys p+TspaNR fV  g
    KIAA1439   494 PPPMARPVPlpvPDTKpPTTSTEGGAASPTSPTYSTPSTSPANR-FVSVG 542  

                   PRdPsfi...yQaQsRiCDWylg<-*
                   PRdPsf++ + Q Qs    Wylg   
    KIAA1439   543 PRDPSFVnipQQTQS----WYLG    561  

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