# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk07374s1.fasta.huge -Q ../query/KIAA1438.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1438, 1075 aa vs ./tmplib.24314 library 1986430 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.2152+/-0.0114; mu= -15.0066+/- 0.770 mean_var=530.0943+/-124.461, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.055705 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1243 ( 828 res) pf00817 ( 828) 540 58.6 4.1e-09 >>KIAA1243 ( 828 res) pf00817 (828 aa) initn: 1256 init1: 312 opt: 540 Z-score: 255.4 bits: 58.6 E(): 4.1e-09 Smith-Waterman score: 1482; 38.263% identity (61.385% similar) in 852 aa overlap (349-1072:2-828) 320 330 340 350 360 370 KIAA14 FLAEQPPLPPPPLLPPSLTNGTTIPTAKSTPTLIKQSQPKSASEKSQRSKKAKELKPKVK :.:.:::.::. ..: .:::: :. ::.:: KIAA12 GPALVKQSHPKNPNDK-HRSKKCKDPKPRVK 10 20 30 380 390 400 410 420 430 KIAA14 KLKYHQYIPPDQKQDRGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHHNYQAILPAPPK ::::::::::::: ... : :::.::..:::::::::::::.::.: :.:::.::::: : KIAA12 KLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQKQ-HYNYQTILPAPFK 40 50 60 70 80 440 450 460 470 480 490 KIAA14 SAGEALGSSGTPPVRSLSTTNSSSSSGAPGPCGLARQNSTSLTGKPGALPANLDDMKVAE .. ..:: ::. ....:. :::... . ::: ::..:::.::.: KIAA12 PLNDKNSNSG----------NSALNNATPN---TPRQNTSTPVRKPGPLPSSLDDLKVSE 90 100 110 120 130 500 510 520 530 540 550 KIAA14 LKQELKLRSLPVSGTKTELIERLRAYQDQISP--VPGAPKAPAATSILHKAGEVVVAFPA :: :::::.::::::: .:::::. ::. : . :. : ....:. . ::.::.:. KIAA12 LKTELKLRGLPVSGTKPDLIERLKPYQEVNSSGLAAGGIVAVSSSAIVTSNPEVTVALPV 140 150 160 170 180 190 560 570 580 590 600 610 KIAA14 ARLSTGPALVAAGLAPAEVVVATVASSGVVKFGSTGSTPPVSPTPSERSLLSTGDENSTP . : . :..... .. . ...:.... .. : :.::.:::.: ::: : : KIAA12 TTLHN---TVTSSVSTLKAELPPTGTSNATRVENVHSPLPISPSPSEQSSLSTDDTNM-- 200 210 220 230 240 250 620 630 640 650 660 670 KIAA14 GDTFGEMVTSPLTQLTLQASPLQILVKEEGPRAGSCCLSPGGRAELEGRDKDQMLQEKDK .::: :..: . :..:::.. .:.. : :: ::.. .::. ::::.: KIAA12 ADTFTEIMTMMSPSQFLSSSPLRMTNNEDSLSPTSSTLS---NLELDAAEKDRKLQEKEK 260 270 280 290 300 680 690 700 710 720 KIAA14 QIEALTRMLRQKQQLVERLKLQLEQEKRAQQPAP---AP-AP------------LGTPVK ::: : : :.:.:.::: ::.::: :::.:: : : :: ::. .: KIAA12 QIEELKRKLEQEQKLVEVLKMQLEVEKRGQQQRPLEAQPSAPGHSVKSDQKHGSLGSSIK 310 320 330 340 350 360 730 740 750 760 KIAA14 QENSFSSCQLSQQPLGPA-HPFNPSLAAPATNHIDPCAVA-----P-G------------ .: :. .:. :.::. : : . ... . . . ::. : : KIAA12 DEASLPDCSSSRQPIPVASHAVGQPVSTGGQTLVAKKAVVIKQEVPVGQAEQQSVVSQFY 370 380 390 400 410 420 770 780 KIAA14 -------PPSVVVKQEAL-------------------------------QPEPEP--VPA ::.::.. .:: : :. KIAA12 VSSQGQPPPAVVAQPQALLTTQTAQLLLPVSIQGSSVTSVQLPVGSLKLQTSPQAGMQTQ 430 440 450 460 470 480 790 800 810 820 KIAA14 PQLLLGPQGPS--LIKGVAPPTLITDSTGTHLVLT-------VTNKNADS----PGLSSG ::. . : :. : .:.:: . :..: . ::. : ...:.: : KIAA12 PQIATAAQIPTAALASGLAPTVPQTQDTFPQHVLSQPQQVRKVFTNSASSNTVLPYQRHP 490 500 510 520 530 540 830 840 850 860 KIAA14 SP--QQP-------SSQPGSPAPAPSAQMDLEHPLQP--------------LFGTPTSLL .: ::: : . :: :: : . : .: :::.:.. KIAA12 APAVQQPFINKASNSVLQSRNAPLPSLQNGPNTPNKPSSPPPPQQFVVQHSLFGSPVAKT 550 560 570 580 590 600 870 880 890 900 910 920 KIAA14 KKEPPGYEEAM-----SQQPKQQENGSSSQQMDDLFDILIQSGEISADFKEPPSLPGKEK : .:: ::::. .: : . ... ::::::::::::.::::: .:: :: .: . KIAA12 K-DPPRYEEAIKQTRSTQAPLPEISNAHSQQMDDLFDILIKSGEISLPIKEEPSPISKMR 610 620 630 640 650 660 930 940 950 960 970 KIAA14 PSPKTVCGSPL---AAQPSPSAEL-PQAAPPPPGS--PSLPGRLEDFLE----SSTGLPL : .. :. ...: :.... : .. : :: :: ..:: ::. :.. .: KIAA12 PVTASITTMPVNTVVSRPPPQVQMAPPVSLEPMGSLSASLENQLEAFLDGTLPSANEIPP 670 680 690 700 710 720 980 990 1000 1010 1020 1030 KIAA14 LTSGHDGPEPLSLIDDLHSQMLSSTAILDHPPSPMDTSELHFVPEPSSTMGLDLADGHLD : :. . ::.:::.::....:: ...::: :::.::: .:. . ..:::.:..:: KIAA12 LQSSSEDREPFSLIEDLQNDLLSHSGMLDHSHSPMETSETQFAA-GTPCLSLDLSDSNLD 730 740 750 760 770 780 1040 1050 1060 1070 KIAA14 SMDWLELSSGGPVLSLAPLSTTAPSLFSTDFLDGHDLQLHWDSCL .:.::... . .:.::::::::.::.:::: .:: : :: KIAA12 NMEWLDITMPNSSSGLTPLSTTAPSMFSADFLDPQDLPLPWD 790 800 810 820 1075 residues in 1 query sequences 1986430 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:22:29 2008 done: Thu Dec 18 15:22:30 2008 Total Scan time: 0.720 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]